3IC1	Hydrolase	date	Jul 17, 2009
title	Crystal Structure Of Zinc-Bound Succinyl-Diaminopimelate Des From Haemophilus Influenzae
authors	B.P.Nocek, D.M.Gillner, R.C.Holz, A.Joachimiak, Midwest Center F Structural Genomics (Mcsg)
compound		source
Molecule: Succinyl-Diaminopimelate Desuccinylase Chain: A, B Synonym: Sdap Desuccinylase, N-Succinyl-Ll-2,6-Diaminohepta Amidohydrolase; Ec: 3.5.1.18 Engineered: Yes		Organism_scientific: Haemophilus Influenzae Organism_taxid: 727 Gene: Dape, Hi0102 Expression_system: Escherichia Coli Bl21(De3) Expression_system_taxid: 469008 Expression_system_strain: Bl21de3
symmetry	Space Group: P 21 21 21	R_factor 0.194 R_Free 0.250
crystal cell	length a length b length c angle alpha angle beta angle gamma 44.697 95.751 185.426 90.00 90.00 90.00
method	X-Ray Diffraction	resolution	2.30 Å
ligand	GOL, SO4, ZN	enzyme	Hydrolase E.C.3.5.1.18 BRENDA
Gene Ontology	Chain Function Process Component A, B
Primary reference	Structural basis for catalysis by the mono- and dimetalated forms of the dapE-encoded N-succinyl-L,L-diaminopimelic acid desuccinylase., Nocek BP, Gillner DM, Fan Y, Holz RC, Joachimiak A, J Mol Biol. 2010 Apr 2;397(3):617-26. Epub 2010 Feb 4. PMID:20138056

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (124 Kb) [Save to disk] Biological Unit Coordinates (3ic1.pdb1.gz) 118 Kb LPC: Ligand-Protein Contacts for 3IC1 CSU: Contacts of Structural Units for 3IC1 Structure Factors (684 Kb) Retrieve 3IC1 in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 3IC1 from S2C, [Save to disk] Re-refined 3ic1 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 3IC1 in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 3IC1

Ramachandran plot from PDBSum

Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 3IC1, from MSDmotif at EBI

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [3ic1_A] [3ic1_B] [3ic1] SWISS-PROT database: [P44514] Domain organization of [DAPE_HAEIN] by SWISSPFAM

Other resources with information on 3IC1

Community annotation for 3IC1 at PDBWiki (http://pdbwiki.org) MMDB (Entrez's Structure Database)

Movements, Movies and Images

Images from IMB Jena Image Library of Biological Macromolecules.

You may enter another PDB ID code

Go [Back], to the [PDB Lite page], to the [OCA Search page] or to the [PDB Home page]

---

OCA© by Jaime Prilusky, 1996-2014,2022 Bioinformatics Unit Weizmann Institute of Science

---