3ID8 Transferase date Jul 20, 2009
title Ternary Complex Of Human Pancreatic Glucokinase Crystallized Activator, Glucose And Amp-Pnp
authors P.Petit, L.Gluais, A.Lagarde, J.A.Boutin, G.Ferry, L.Vuillard
compound source
Molecule: Glucokinase
Chain: A
Fragment: Unp Residues 12-465
Synonym: Hexokinase Type Iv, Hk Iv, Hexokinase-4, Hk4, Hexo
Ec: 2.7.1.2
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_strain: Bl21
Expression_system_vector_type: Plasmid
symmetry Space Group: P 21 21 21
R_factor 0.201 R_Free 0.279
crystal
cell
length a length b length c angle alpha angle beta angle gamma
67.000 82.600 86.800 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.40 Å
ligand ANP, GLC, K, MG, MRK BindingDB enzyme Transferase E.C.2.7.1.2 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceThe active conformation of human glucokinase is not altered by allosteric activators., Petit P, Antoine M, Ferry G, Boutin JA, Lagarde A, Gluais L, Vincentelli R, Vuillard L, Acta Crystallogr D Biol Crystallogr. 2011 Nov;67(Pt 11):929-35. Epub 2011 Oct 19. PMID:22101819
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (80 Kb) [Save to disk]
  • Biological Unit Coordinates (3id8.pdb1.gz) 74 Kb
  • LPC: Ligand-Protein Contacts for 3ID8
  • CSU: Contacts of Structural Units for 3ID8
  • Structure Factors (148 Kb)
  • Retrieve 3ID8 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3ID8 from S2C, [Save to disk]
  • Re-refined 3id8 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 3ID8 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 3ID8
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 3ID8, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3id8] [3id8_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 3ID8
  • Community annotation for 3ID8 at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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