3IDM date
authors
compound source
symmetry
R_factor
R_Free
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution
ligand NRG enzyme
Primary referenceCrystallographic definition of the epitope promiscuity of the broadly neutralizing anti-human immunodeficiency virus type 1 antibody 2F5: vaccine design implications., Bryson S, Julien JP, Hynes RC, Pai EF, J Virol. 2009 Nov;83(22):11862-75. Epub 2009 Sep 9. PMID:19740978
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (78 Kb) [Save to disk]
  • Biological Unit Coordinates (3idm.pdb1.gz) 74 Kb
  • LPC: Ligand-Protein Contacts for 3IDM
  • CSU: Contacts of Structural Units for 3IDM
  • Structure Factors (500 Kb)
  • Retrieve 3IDM in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3IDM from S2C, [Save to disk]
  • Re-refined 3idm structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 3IDM in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3idm] [3idm_A] [3idm_B] [3idm_C]
  • SWISS-PROT database:
  • Domains found in 3IDM: [IG_like] [IGv ] by SMART

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