3IDU Structural Genomics, Unknown Function date Jul 21, 2009
title Crystal Structure Of The Cardb Domain Of The Pf1109 Protein With Di-Metal Ions From Pyrococcus Furiosus, Northeast Stru Genomics Consortium Target Pfr193a
authors F.Forouhar, H.Neely, J.Seetharaman, M.Mao, R.Xiao, C.Ciccosanti, D J.K.Everett, R.Nair, T.B.Acton, B.Rost, G.T.Montelione, J.F.Hunt Northeast Structural Genomics Consortium (Nesg)
compound source
Molecule: Uncharacterized Protein
Chain: A, B
Fragment: Cardb Domain
Engineered: Yes
 Organism_scientific: Pyrococcus Furiosus
Organism_taxid: 2261
Strain: Dsm 3638
Gene: Pf1109
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_strain: Bl21(De3)+ Magic
Expression_system_vector_type: Plasmid
Expression_system_vector: Pet 21-23c
Expression_system_plasmid: Bl21
symmetry Space Group: P 1 21 1
R_factor 0.190 R_Free 0.212
crystal
cell
length a length b length c angle alpha angle beta angle gamma
24.551 72.665 58.456 90.00 93.44 90.00
method X-Ray Diffractionresolution 1.70 Å
ligand MN, MSE enzyme
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (45 Kb) [Save to disk]
  • Biological Unit Coordinates (3idu.pdb1.gz) 21 Kb
  • Biological Unit Coordinates (3idu.pdb2.gz) 21 Kb
  • LPC: Ligand-Protein Contacts for 3IDU
  • CSU: Contacts of Structural Units for 3IDU
  • Structure Factors (607 Kb)
  • Retrieve 3IDU in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3IDU from S2C, [Save to disk]
  • Re-refined 3idu structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 3IDU in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 3IDU
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 3IDU, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3idu] [3idu_A] [3idu_B]
  • SWISS-PROT database: [Q8U1U6]
  • Domain organization of [Q8U1U6_PYRFU] by SWISSPFAM
    • Other resources with information on 3IDU
  • Community annotation for 3IDU at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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