3IFM Virus date Jan 16, 1994
title Pf1 Filamentous Bacteriophage: Refinement Of A Molecular Model By Simulated Annealing Using 3.3 Angstroms Resolution X-Ray Fibre Diffraction Data
authors D.A.Marvin
compound source
Molecule: Pf1 Filamentous Bacteriophage
Chain: A
Synonym: Pf1 Inovirus
Other_details: Major Coat Protein Assembly In The Lower- Temperature Symmetry
Organism_scientific: Pseudomonas Phage Pf1
Organism_taxid: 10871
Other_details: Grown In Pseudomonas Aeruginosa
symmetry Space Group: P 1
length a length b length c angle alpha angle beta angle gamma
1.000 1.000 1.000 90.00 90.00 90.00
method Fiber Diffractionresolution 3.30 Å
Primary referencePf1 filamentous bacteriophage: refinement of a molecular model by simulated annealing using 3.3 A resolution X-ray fibre diffraction data., Gonzalez A, Nave C, Marvin DA, Acta Crystallogr D Biol Crystallogr. 1995 Sep 1;51(Pt 5):792-804. PMID:15299811
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (10 Kb) [Save to disk]
  • Biological Unit Coordinates (3ifm.pdb1.gz) 171 Kb
  • CSU: Contacts of Structural Units for 3IFM
  • Likely Quarternary Molecular Structure file(s) for 3IFM
  • Retrieve 3IFM in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3IFM from S2C, [Save to disk]
  • View 3IFM in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 3IFM
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 3IFM, from MSDmotif at EBI
  • Genome occurence of 3IFM's fold from GeneCensus
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d3ifm__, region [Jmol] [rasmolscript] [script source]
  • Fold representative 3ifm from FSSP and Dali (Families of Structurally Similar Proteins)
  • Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH
  • Summaries and structural analyses of PDB data files from PDBSum
  • Identification of Protein Pockets & Cavities at CASTp
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3ifm_A] [3ifm]
  • SWISS-PROT database: [P03621]
  • Domain organization of [CAPSD_BPPF1] by SWISSPFAM
  • Other resources with information on 3IFM
  • Community annotation for 3IFM at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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