3IGO Transferase date Jul 28, 2009
title Crystal Structure Of Cryptosporidium Parvum Cdpk1, Cgd3_920
authors A.K.Wernimont, J.D.Artz, P.Finnerty, M.Amani, A.Allali-Hassanali M.Vedadi, W.Tempel, F.Mackenzie, A.M.Edwards, C.H.Arrowsmith, C. J.Weigelt, A.Bochkarev, R.Hui, Y.H.Lin, Structural Genomics Con (Sgc)
compound source
Molecule: Calmodulin-Domain Protein Kinase 1
Chain: A
Fragment: Unp Residues 70-538
Engineered: Yes
Organism_scientific: Cryptosporidium Parvum
Organism_taxid: 353152
Strain: Iowa II
Gene: Cgd3_920
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pet15mhl
symmetry Space Group: P 1 21 1
R_factor 0.203 R_Free 0.258
crystal
cell
length a length b length c angle alpha angle beta angle gamma
60.388 55.550 81.697 90.00 105.25 90.00
method X-Ray Diffractionresolution 2.25 Å
ligand ANP, CA, GOL, PO4, SRT enzyme
Gene CGD3
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceStructures of apicomplexan calcium-dependent protein kinases reveal mechanism of activation by calcium., Wernimont AK, Artz JD, Finerty P Jr, Lin YH, Amani M, Allali-Hassani A, Senisterra G, Vedadi M, Tempel W, Mackenzie F, Chau I, Lourido S, Sibley LD, Hui R, Nat Struct Mol Biol. 2010 May;17(5):596-601. Epub 2010 May 2. PMID:20436473
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (83 Kb) [Save to disk]
  • Biological Unit Coordinates (3igo.pdb1.gz) 75 Kb
  • LPC: Ligand-Protein Contacts for 3IGO
  • CSU: Contacts of Structural Units for 3IGO
  • Structure Factors (540 Kb)
  • Retrieve 3IGO in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3IGO from S2C, [Save to disk]
  • Re-refined 3igo structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 3IGO in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 3IGO
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 3IGO, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3igo_A] [3igo]
  • SWISS-PROT database: [A3FQ16]
  • Domain organization of [A3FQ16_CRYPV] by SWISSPFAM
  • Domains found in 3IGO: [EFh] [S_TKc ] by SMART
  • Other resources with information on 3IGO
  • Community annotation for 3IGO at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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