3II5 Transferase date Jul 31, 2009
title The Complex Of Wild-Type B-Raf With Pyrazolo Pyrimidine Inhi
authors W.Xu, D.Breger, N.Torres, M.Dutia, D.Powell, G.Ciszewski
compound source
Molecule: B-Raf Proto-Oncogene Serinethreonine-Protein Kin
Chain: A, B
Fragment: Unp Residues 432-726
Synonym: P94, V-Raf Murine Sarcoma Viral Oncogene Homolog B
Ec: 2.7.11.1
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Braf, Braf1, Rafb1
Expression_system: Spodoptera Frugiperda
Expression_system_taxid: 7108
Expression_system_vector_type: Baculovirus
symmetry Space Group: P 41 21 2
R_factor 0.207 R_Free 0.251
crystal
cell
length a length b length c angle alpha angle beta angle gamma
110.219 110.219 148.468 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.79 Å
ligand 831, PO4 BindingDB enzyme Transferase E.C.2.7.11.1 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A, B


Primary referenceNon-hinge-binding pyrazolo[1,5-a]pyrimidines as potent B-Raf kinase inhibitors., Berger DM, Torres N, Dutia M, Powell D, Ciszewski G, Gopalsamy A, Levin JI, Kim KH, Xu W, Wilhelm J, Hu Y, Collins K, Feldberg L, Kim S, Frommer E, Wojciechowicz D, Mallon R, Bioorg Med Chem Lett. 2009 Dec 1;19(23):6519-23. Epub 2009 Oct 26. PMID:19864136
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (91 Kb) [Save to disk]
  • Biological Unit Coordinates (3ii5.pdb1.gz) 44 Kb
  • Biological Unit Coordinates (3ii5.pdb2.gz) 43 Kb
  • Biological Unit Coordinates (3ii5.pdb3.gz) 85 Kb
  • LPC: Ligand-Protein Contacts for 3II5
  • CSU: Contacts of Structural Units for 3II5
  • Structure Factors (171 Kb)
  • Retrieve 3II5 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3II5 from S2C, [Save to disk]
  • Re-refined 3ii5 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 3II5 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 3II5
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 3II5, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3ii5_A] [3ii5_B] [3ii5]
  • SWISS-PROT database: [P15056]
  • Domain organization of [BRAF_HUMAN] by SWISSPFAM
  • Domain found in 3II5: [STYKc ] by SMART
  • Other resources with information on 3II5
  • Community annotation for 3II5 at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

  • You may enter another PDB ID code
    Go [Back], to the [PDB Lite page], to the [OCA Search page] or to the [PDB Home page]
    OCA© by Jaime Prilusky, 1996-2014,2022
    Bioinformatics Unit
    Weizmann Institute of Science