3IPY	Transferase Transferase Inhibitor	date	Aug 18, 2009
title	X-Ray Structure Of Human Deoxycytidine Kinase In Complex Wit Inhibitor
authors	L.W.Tari, R.V.Swanson, M.Hunter, I.Hoffman, T.R.Stouch, K.G.Carso
compound		source
Molecule: Deoxycytidine Kinase Chain: A, B Synonym: Dck Ec: 2.7.1.74		Organism_scientific: Homo Sapiens Organism_taxid: 9606
symmetry	Space Group: I 21 21 21	R_factor 0.214 R_Free 0.273
crystal cell	length a length b length c angle alpha angle beta angle gamma 74.556 74.428 239.097 90.00 90.00 90.00
method	X-Ray Diffraction	resolution	2.54 Å
ligand	B87, MLT BindingDB	enzyme	Transferase E.C.2.7.1.74 BRENDA
Gene Ontology	Chain Function Process Component A, B deoxyadenosine kinase activi... deoxycytidine kinase activit... deoxyguanosine kinase activi... deoxynucleoside kinase activ...
Primary reference	Lead optimization and structure-based design of potent and bioavailable deoxycytidine kinase inhibitors., Jessop TC, Tarver JE, Carlsen M, Xu A, Healy JP, Heim-Riether A, Fu Q, Taylor JA, Augeri DJ, Shen M, Stouch TR, Swanson RV, Tari LW, Hunter M, Hoffman I, Keyes PE, Yu XC, Miranda M, Liu Q, Swaffield JC, David Kimball S, Nouraldeen A, Wilson AG, Foushee AM, Jhaver K, Finch R, Anderson S, Oravecz T, Carson KG, Bioorg Med Chem Lett. 2009 Dec 1;19(23):6784-7. Epub 2009 Sep 25. PMID:19836232

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (86 Kb) [Save to disk] Biological Unit Coordinates (3ipy.pdb1.gz) 41 Kb Biological Unit Coordinates (3ipy.pdb2.gz) 41 Kb Biological Unit Coordinates (3ipy.pdb3.gz) 80 Kb LPC: Ligand-Protein Contacts for 3IPY CSU: Contacts of Structural Units for 3IPY Structure Factors (194 Kb) Retrieve 3IPY in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 3IPY from S2C, [Save to disk] Re-refined 3ipy structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 3IPY in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 3IPY

Ramachandran plot from PDBSum

Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 3IPY, from MSDmotif at EBI

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [3ipy_A] [3ipy] [3ipy_B] SWISS-PROT database: Domain organization of by SWISSPFAM

Other resources with information on 3IPY

Community annotation for 3IPY at PDBWiki (http://pdbwiki.org) MMDB (Entrez's Structure Database)

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