3IUT Hydrolase date Aug 31, 2009
title The Crystal Structure Of Cruzain In Complex With A Tetrafluorophenoxymethyl Ketone Inhibitor
authors I.D.Kerr, M.Debnath, L.S.Brinen
compound source
Molecule: Cruzipain
Chain: A
Fragment: Unp Residues 123-337
Synonym: Cruzaine, Major Cysteine Proteinase
Ec: 3.4.22.51
Engineered: Yes
Mutation: Yes
Organism_scientific: Trypanosoma Cruzi
Organism_taxid: 5693
Gene: Cruzipain
Expression_system: Pichia Pastoris
Expression_system_taxid: 4922
Expression_system_strain: X33
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Ppiczalpha C
symmetry Space Group: P 1 21 1
R_factor 0.127 R_Free 0.153
crystal
cell
length a length b length c angle alpha angle beta angle gamma
44.081 51.451 45.853 90.00 115.50 90.00
method X-Ray Diffractionresolution 1.20 Å
ligand EDO, KB2 enzyme Hydrolase E.C.3.4.22.51 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceNonpeptidic tetrafluorophenoxymethyl ketone cruzain inhibitors as promising new leads for chagas disease chemotherapy., Brak K, Kerr ID, Barrett KT, Fuchi N, Debnath M, Ang K, Engel JC, McKerrow JH, Doyle PS, Brinen LS, Ellman JA, J Med Chem. 2010 Feb 25;53(4):1763-73. PMID:20088534
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (82 Kb) [Save to disk]
  • Biological Unit Coordinates (3iut.pdb1.gz) 77 Kb
  • LPC: Ligand-Protein Contacts for 3IUT
  • CSU: Contacts of Structural Units for 3IUT
  • Structure Factors (384 Kb)
  • Retrieve 3IUT in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3IUT from S2C, [Save to disk]
  • Re-refined 3iut structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 3IUT in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 3IUT
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 3IUT, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3iut_A] [3iut]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domain found in 3IUT: [Pept_C1 ] by SMART
  • Other resources with information on 3IUT
  • Community annotation for 3IUT at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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