3IYM Virus date Feb 05, 2010
title Backbone Trace Of The Capsid Protein Dimer Of A Fungal Parti From Electron Cryomicroscopy And Homology Modeling
authors J.Tang, J.Pan, W.F.Havens, W.F.Ochoa, H.Li, R.S.Sinkovits, T.S.Y.G S.A.Ghabrial, M.L.Nibert, J.Y.Tao, T.S.Baker
compound source
Molecule: Capsid Protein
Chain: A, B
 Organism_scientific: Penicillium Stoloniferum Virus S
Organism_taxid: 216371
Strain: Penicillium Stoloniferum Virus S
Other_details: Virus
symmetry Space Group: P 1
R_factor
R_Free
crystal
cell
length a length b length c angle alpha angle beta angle gamma
1.000 1.000 1.000 90.00 90.00 90.00
method Electron Microscopyresolution 4.70 Å
Primary referenceBackbone trace of partitivirus capsid protein from electron cryomicroscopy and homology modeling., Tang J, Pan J, Havens WM, Ochoa WF, Guu TS, Ghabrial SA, Nibert ML, Tao YJ, Baker TS, Biophys J. 2010 Jul 21;99(2):685-94. PMID:20643089
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (62 Kb) [Save to disk]
  • Biological Unit Coordinates (3iym.pdb1.gz) 3136 Kb
  • CSU: Contacts of Structural Units for 3IYM
  • Retrieve 3IYM in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3IYM from S2C, [Save to disk]
    • View 3IYM in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 3IYM
  • VIPERdb: visual, structural and computational analysis of 3IYM
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 3IYM, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3iym_A] [3iym_B] [3iym]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
    • Other resources with information on 3IYM
  • Community annotation for 3IYM at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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