3IZ4 Rna Binding Protein Rna date Sep 21, 2010
title Modified E. Coli Tmrna In The Resume State With The Trna-Lik In The Ribosomal P Site Interacting With The Smpb
authors Y.Hashem, J.Fu, J.Frank
compound source
Molecule: Modified E. Coli Transfer-Messenger Rna
Chain: A
Engineered: Yes
 Organism_scientific: Escherichia Coli
Organism_taxid: 562
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_vector_type: Plasmid

Molecule: Ssra-Binding Protein
Chain: B
Engineered: Yes
Organism_scientific: Escherichia Coli
Organism_taxid: 562
Expression_system: Escherichia Coli
Expression_system_taxid: 562
symmetry Space Group: P 1
R_factor
R_Free
crystal
cell
length a length b length c angle alpha angle beta angle gamma
1.000 1.000 1.000 90.00 90.00 90.00
method Electron Microscopyresolution 13.60 Å
note 3IZ4 (Molecule of the Month:pdb157)
Gene
Ontology
ChainFunctionProcessComponent
B


Primary referenceVisualizing the transfer-messenger RNA as the ribosome resumes translation., Fu J, Hashem Y, Wower I, Lei J, Liao HY, Zwieb C, Wower J, Frank J, EMBO J. 2010 Nov 17;29(22):3819-25. Epub 2010 Oct 12. PMID:20940705
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (152 Kb) [Save to disk]
  • Biological Unit Coordinates (3iz4.pdb1.gz) 148 Kb
  • CSU: Contacts of Structural Units for 3IZ4
  • Retrieve 3IZ4 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3IZ4 from S2C, [Save to disk]
    • View 3IZ4 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 3IZ4
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 3IZ4, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3iz4] [3iz4_B] [3iz4_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
    • Other resources with information on 3IZ4
  • Community annotation for 3IZ4 at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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