3J8V	Virus Immune System	date	Nov 19, 2014
title	Cryo-Em Reconstruction Of Quasi-Hpv16 Complex With H16.14j F
authors	J.Guan, S.Hafenstein
compound		source
Molecule: L1 Chain: A, B, C, D, E Fragment: Unp Residues 47-500 Synonym: L1 Protein, Major Capsid Protein L1		Organism_scientific: Human Papillomavirus Type 16 Organism_taxid: 333760
Molecule: H16.14j Light Chain Chain: L, J, K, M Fragment: Variable Domain Fab		Organism_scientific: Mus Musculus Organism_common: Mouse Organism_taxid: 10090
Molecule: H16.14j Heavy Chain Chain: H, F, G, I Fragment: Variable Domain Fab		Organism_scientific: Mus Musculus Organism_common: Mouse Organism_taxid: 10090
symmetry	Space Group: P 1	R_factor R_Free
crystal cell	length a length b length c angle alpha angle beta angle gamma 1.000 1.000 1.000 90.00 90.00 90.00
method	Electron Microscopy	resolution	13.90 Å
Gene Ontology	Chain Function Process Component A, D, C, E, B
Primary reference	Structural comparison of four different antibodies interacting with human papillomavirus 16 and mechanisms of neutralization., Guan J, Bywaters SM, Brendle SA, Lee H, Ashley RE, Makhov AM, Conway JF, Christensen ND, Hafenstein S, Virology. 2015 May 18;483:253-263. doi: 10.1016/j.virol.2015.04.016. PMID:25996608

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (579 Kb) [Save to disk] Biological Unit Coordinates (3j8v.pdb1.gz) 33820 Kb CSU: Contacts of Structural Units for 3J8V Retrieve 3J8V in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 3J8V from S2C, [Save to disk]

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Visual 3D analysis of 3J8V

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Structure-derived information

Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 3J8V, from MSDmotif at EBI

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [3j8v_H] [3j8v_I] [3j8v_L] [3j8v_B] [3j8v_F] [3j8v] [3j8v_D] [3j8v_G] [3j8v_C] [3j8v_E] [3j8v_M] [3j8v_K] [3j8v_A] [3j8v_J] SWISS-PROT database: Domain organization of by SWISSPFAM Domain found in 3J8V: [IGv ] by SMART

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