OCA Atlas for 3J9I

3J9I

date

authors

compound

source

symmetry

R_factor

R_Free

crystal
cell

length a	length b	length c	angle alpha	angle beta	angle gamma

method

X-Ray Diffraction

resolution

Gene
Ontology

Chain	Function	Process	Component
K, M, X, L, W, V, 2, J, Z, H, 1, I, Y, N
R, O, E, U, A, P, T, Q, D, G, F, S, B, C

Primary reference

Electron counting and beam-induced motion correction enable near-atomic-resolution single-particle cryo-EM., Li X, Mooney P, Zheng S, Booth CR, Braunfeld MB, Gubbens S, Agard DA, Cheng Y, Nat Methods. 2013 Jun;10(6):584-90. doi: 10.1038/nmeth.2472. Epub 2013 May 5. PMID:23644547

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (775 Kb) [Save to disk]

Biological Unit Coordinates (3j9i.pdb1.gz) 770 Kb

CSU: Contacts of Structural Units for 3J9I

Retrieve 3J9I in mmCIF format [Save to disk]

SEQRES to COORDINATES correlation for 3J9I from S2C, [Save to disk]

View 3J9I in 3D

Proteopedia, because life has more than 2D.

On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.

On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Structure-derived information

Dipole moment, from Dipole Server at Weizmann Institute

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [3j9i] [3j9i_1] [3j9i_2] [3j9i_A] [3j9i_B] [3j9i_C] [3j9i_D] [3j9i_E] [3j9i_F] [3j9i_G] [3j9i_H] [3j9i_I] [3j9i_J] [3j9i_K] [3j9i_L] [3j9i_M] [3j9i_N] [3j9i_O] [3j9i_P] [3j9i_Q] [3j9i_R] [3j9i_S] [3j9i_T] [3j9i_U] [3j9i_V] [3j9i_W] [3j9i_X] [3j9i_Y] [3j9i_Z]

SWISS-PROT database:

Domain found in 3J9I: [Proteasome_A_N ] by SMART

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