3JAU Virus Immune System date Jun 24, 2015
title The Cryoem Map Of Ev71 Mature Viron In Complex With The Fab Of Antibody D5
authors C.Fan, X.H.Ye, Z.Q.Ku, T.Zuo, L.L.Kong, C.Zhang, J.P.Shi, Q.W.Liu, T Y.Y.Zhang, W.Jiang, L.Q.Zhang, Z.Huang, Y.Cong
compound source
Molecule: Capsid Protein Vp1
Chain: A
Fragment: Unp Residues 207-223
 Organism_scientific: Human Enterovirus
Organism_taxid: 1193974

Molecule: Heavy Chain Of Fab Fragment Variable Region Of An
Chain: H
Organism_scientific: Mus Musculus
Organism_common: Mouse
Organism_taxid: 10090

Molecule: Light Chain Of Fab Fragment Variable Region Of An
Chain: L
Organism_scientific: Mus Musculus
Organism_common: Mouse
Organism_taxid: 10090
symmetry Space Group: P 1
R_factor
R_Free
crystal
cell
length a length b length c angle alpha angle beta angle gamma
1.000 1.000 1.000 90.00 90.00 90.00
method Electron Microscopyresolution 4.80 Å
Primary referenceStructural Basis for Recognition of Human Enterovirus 71 by a Bivalent Broadly Neutralizing Monoclonal Antibody., Ye X, Fan C, Ku Z, Zuo T, Kong L, Zhang C, Shi J, Liu Q, Chen T, Zhang Y, Jiang W, Zhang L, Huang Z, Cong Y, PLoS Pathog. 2016 Mar 3;12(3):e1005454. doi: 10.1371/journal.ppat.1005454., eCollection 2016 Mar. PMID:26938634
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (38 Kb) [Save to disk]
  • Biological Unit Coordinates (3jau.pdb1.gz) 1955 Kb
  • CSU: Contacts of Structural Units for 3JAU
  • Retrieve 3JAU in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3JAU from S2C, [Save to disk]
    • View 3JAU in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 3JAU
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3jau_A] [3jau_L] [3jau_H] [3jau]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domain found in 3JAU: [IGv ] by SMART
    • Other resources with information on 3JAU
  • Community annotation for 3JAU at PDBWiki (http://pdbwiki.org)

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