3JTO Protein Binding date Sep 14, 2009
title Crystal Structure Of The C-Terminal Domain Of Ypbh
authors F.Wang, Z.Mei, Y.Qi, C.Yan, J.Wang, Y.Shi
compound source
Molecule: Adapter Protein Meca 2
Chain: A, B, C, D, E, F
Fragment: C-Terminal Domain, Unp Residues 101-194
Synonym: Ypbh
Engineered: Yes
 Organism_scientific: Bacillus Subtilis
Organism_taxid: 1423
Gene: Ypbh
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_strain: Bl21(De3)
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pgex-6p-1
symmetry Space Group: I 41 2 2
R_factor 0.230 R_Free 0.269
crystal
cell
length a length b length c angle alpha angle beta angle gamma
162.056 162.056 142.848 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.40 Å
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (94 Kb) [Save to disk]
  • Biological Unit Coordinates (3jto.pdb1.gz) 17 Kb
  • Biological Unit Coordinates (3jto.pdb2.gz) 16 Kb
  • Biological Unit Coordinates (3jto.pdb3.gz) 16 Kb
  • Biological Unit Coordinates (3jto.pdb4.gz) 17 Kb
  • Biological Unit Coordinates (3jto.pdb5.gz) 16 Kb
  • Biological Unit Coordinates (3jto.pdb6.gz) 16 Kb
  • CSU: Contacts of Structural Units for 3JTO
  • Structure Factors (590 Kb)
  • Retrieve 3JTO in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3JTO from S2C, [Save to disk]
  • Re-refined 3jto structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 3JTO in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 3JTO
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 3JTO, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3jto_E] [3jto_D] [3jto_F] [3jto_B] [3jto_C] [3jto] [3jto_A]
  • SWISS-PROT database: [P50734]
  • Domain organization of [MECA2_BACSU] by SWISSPFAM
    • Other resources with information on 3JTO
  • Community annotation for 3JTO at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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