3K25 Structural Genomics, Unknown Function date Sep 29, 2009
title Crystal Structure Of Slr1438 Protein From Synechocystis Sp. Northeast Structural Genomics Consortium Target Sgr112
authors A.Kuzin, M.Su, J.Seetharaman, S.Sahdev, R.Xiao, C.Ciccosanti, R.L. J.K.Everett, R.Nair, T.B.Acton, B.Rost, G.T.Montelione, L.Tong, J Northeast Structural Genomics Consortium (Nesg)
compound source
Molecule: Slr1438 Protein
Chain: A, B
Engineered: Yes
 Organism_scientific: Synechocystis Sp.
Organism_taxid: 1148
Strain: Pcc 6803
Gene: Slr1438
Expression_system: Escherichia Coli
Expression_system_taxid: 469008
Expression_system_strain: Bl21(De3)+ Magic
Expression_system_vector_type: Pet 21-23c
Expression_system_plasmid: Bl21
symmetry Space Group: P 65
R_factor 0.233 R_Free 0.244
crystal
cell
length a length b length c angle alpha angle beta angle gamma
145.566 145.566 60.950 90.00 90.00 120.00
method X-Ray Diffractionresolution 2.55 Å
ligand MSE, PO4 enzyme
Gene
Ontology
ChainFunctionProcessComponent
A, B


Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (200 Kb) [Save to disk]
  • Biological Unit Coordinates (3k25.pdb1.gz) 99 Kb
  • Biological Unit Coordinates (3k25.pdb2.gz) 99 Kb
  • LPC: Ligand-Protein Contacts for 3K25
  • CSU: Contacts of Structural Units for 3K25
  • Structure Factors (176 Kb)
  • Retrieve 3K25 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3K25 from S2C, [Save to disk]
  • Re-refined 3k25 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
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  • Proteopedia, because life has more than 2D.
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    • Visual 3D analysis of 3K25
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 3K25, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3k25] [3k25_B] [3k25_A]
  • SWISS-PROT database: [P73504]
  • Domain organization of [P73504_SYNY3] by SWISSPFAM
    • Other resources with information on 3K25
  • Community annotation for 3K25 at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
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