3K32 Transferase date Sep 30, 2009
title The Crystal Structure Of Predicted Subunit Of Trna Methyltra From Methanocaldococcus Jannaschii Dsm
authors R.Wu, R.Zhang, L.Freeman, A.Joachimiak, Midwest Center For Struc Genomics (Mcsg)
compound source
Molecule: Uncharacterized Protein Mj0690
Chain: A, B, C, D, E, F
Synonym: Predicted Subunit Of Trna Methyltransferase
Engineered: Yes
 Organism_scientific: Methanocaldococcus Jannaschii
Organism_taxid: 2190
Strain: Dsm 2661
Gene: Mj0690
Expression_system: Escherichia Coli
Expression_system_taxid: 511693
Expression_system_strain: Bl21
Expression_system_vector_type: Pdm68
symmetry Space Group: P 1 21 1
R_factor 0.177 R_Free 0.263
crystal
cell
length a length b length c angle alpha angle beta angle gamma
71.669 121.951 81.224 90.00 116.70 90.00
method X-Ray Diffractionresolution 2.50 Å
ligand GOL, MSE enzyme
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (402 Kb) [Save to disk]
  • Biological Unit Coordinates (3k32.pdb1.gz) 134 Kb
  • Biological Unit Coordinates (3k32.pdb2.gz) 134 Kb
  • Biological Unit Coordinates (3k32.pdb3.gz) 134 Kb
  • LPC: Ligand-Protein Contacts for 3K32
  • CSU: Contacts of Structural Units for 3K32
  • Structure Factors (646 Kb)
  • Retrieve 3K32 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3K32 from S2C, [Save to disk]
  • Re-refined 3k32 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 3K32 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 3K32
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 3K32, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3k32_F] [3k32_E] [3k32_B] [3k32] [3k32_C] [3k32_D] [3k32_A]
  • SWISS-PROT database: [Q58102]
  • Domain organization of [Y690_METJA] by SWISSPFAM
    • Other resources with information on 3K32
  • Community annotation for 3K32 at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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