3K63 Lipid Binding Protein date Oct 08, 2009
title X-Ray Structure Of The Pf04200 Domain From Q9pra0_urepa Prot Ureaplasma Parvum. Nesg Target Uur17a.
authors S.Vorobiev, H.Neely, J.Seetharaman, D.Lee, C.Ciccosanti, L.Mao, R. T.B.Acton, G.T.Montelione, L.Tong, J.F.Hunt, Northeast Structur Genomics Consortium (Nesg)
compound source
Molecule: Conserved Hypothetical Membrane Lipoprotein
Chain: A
Fragment: Lipoprotein_17 Domain
Engineered: Yes
 Organism_scientific: Ureaplasma Parvum
Organism_common: Ureaplasma Urealyticum Biotype 1
Organism_taxid: 134821
Strain: Atcc 700970 Serovar 3
Gene: Uu045
Expression_system: Escherichia Coli Bl21(De3)
Expression_system_taxid: 469008
Expression_system_strain: Bl21 (De3) +Magic
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pet 21-23c
symmetry Space Group: P 32 2 1
R_factor 0.213 R_Free 0.248
crystal
cell
length a length b length c angle alpha angle beta angle gamma
60.557 60.557 64.716 90.00 90.00 120.00
method X-Ray Diffractionresolution 2.49 Å
ligand MSE enzyme
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (24 Kb) [Save to disk]
  • Biological Unit Coordinates (3k63.pdb1.gz) 21 Kb
  • LPC: Ligand-Protein Contacts for 3K63
  • CSU: Contacts of Structural Units for 3K63
  • Structure Factors (212 Kb)
  • Retrieve 3K63 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3K63 from S2C, [Save to disk]
  • Re-refined 3k63 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 3K63 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 3K63
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 3K63, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3k63_A] [3k63]
  • SWISS-PROT database: [Q9PRA0]
  • Domain organization of [Q9PRA0_UREPA] by SWISSPFAM
    • Other resources with information on 3K63
  • Community annotation for 3K63 at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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