3K6N Metal Transport date Oct 09, 2009
title Crystal Structure Of The S225e Mutant Kir3.1 Cytoplasmic Por
authors Y.Xu, H.G.Shin, S.Szep, Z.Lu
compound source
Molecule: G Protein-Activated Inward Rectifier Potassium Ch
Chain: A
Fragment: Cytoplasmic Domain
Synonym: Girk1, Potassium Channel, Inwardly Rectifying Subf Member 3, Inward Rectifier K(+) Channel Kir3.1;
Engineered: Yes
Mutation: Yes
Organism_scientific: Mus Musculus
Organism_common: Mouse
Organism_taxid: 10090
Gene: Girk1, Kcnj3
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_strain: Bl21(De3)
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pet28b
symmetry Space Group: P 4 21 2
R_factor 0.254 R_Free 0.266
crystal
cell
length a length b length c angle alpha angle beta angle gamma
77.455 77.455 86.723 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.00 Å
ligand NA enzyme
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referencePhysical determinants of strong voltage sensitivity of K(+) channel block., Xu Y, Shin HG, Szep S, Lu Z, Nat Struct Mol Biol. 2009 Dec;16(12):1252-8. Epub 2009 Nov 15. PMID:19915587
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (37 Kb) [Save to disk]
  • Biological Unit Coordinates (3k6n.pdb1.gz) 124 Kb
  • LPC: Ligand-Protein Contacts for 3K6N
  • CSU: Contacts of Structural Units for 3K6N
  • Structure Factors (279 Kb)
  • Retrieve 3K6N in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3K6N from S2C, [Save to disk]
  • Re-refined 3k6n structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 3K6N in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 3K6N
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 3K6N, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3k6n] [3k6n_A]
  • SWISS-PROT database: [P63250]
  • Domain organization of [IRK3_MOUSE] by SWISSPFAM
  • Other resources with information on 3K6N
  • Community annotation for 3K6N at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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