3KA7 Oxidoreductase date Oct 18, 2009
title Crystal Structure Of An Oxidoreductase From Methanosarcina Mazei. Northeast Structural Genomics Consortium Target Id Mar208
authors J.Seetharaman, M.Su, D.Wang, H.Janjua, K.Cunningham, L.Owens, R.Xiao, J.Liu, M.C.Baran, T.B.Acton, B.Rost, G.T.Montelione, L.Tong, J.F.Hunt, Northeast Structural Genomics Consortium (Nesg)
compound source
Molecule: Oxidoreductase
Chain: A
Engineered: Yes
Organism_scientific: Methanosarcina Mazei
Organism_taxid: 2209
Gene: Mm_2493
Expression_system: Escherichia Coli
Expression_system_taxid: 562
symmetry Space Group: P 21 21 21
R_factor 0.194 R_Free 0.223
crystal
cell
length a length b length c angle alpha angle beta angle gamma
52.178 67.182 128.074 90.00 90.00 90.00
method X-Ray Diffractionresolution 1.80 Å
ligand FAD, MSE enzyme
Gene MM
Gene
Ontology
ChainFunctionProcessComponent
A


Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (78 Kb) [Save to disk]
  • Biological Unit Coordinates (3ka7.pdb1.gz) 73 Kb
  • LPC: Ligand-Protein Contacts for 3KA7
  • CSU: Contacts of Structural Units for 3KA7
  • Structure Factors (608 Kb)
  • Retrieve 3KA7 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3KA7 from S2C, [Save to disk]
  • Re-refined 3ka7 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 3KA7 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 3KA7
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 3KA7, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3ka7_A] [3ka7]
  • SWISS-PROT database: [Q8PU56]
  • Domain organization of [Q8PU56_METMA] by SWISSPFAM
  • Other resources with information on 3KA7
  • Community annotation for 3KA7 at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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