3KD5 date
authors
compound source
symmetry
R_factor
R_Free
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution
ligand 4DG, MG, PPF enzyme
Gene
Ontology
ChainFunctionProcessComponent
E
  • DNA-directed DNA polymerase ...
  • nuclease activity
  • exonuclease activity
  • 3'-5' exonuclease activity


    • Primary referencePhosphonoformic acid inhibits viral replication by trapping the closed form of the DNA polymerase., Zahn KE, Tchesnokov EP, Gotte M, Doublie S, J Biol Chem. 2011 Jul 15;286(28):25246-55. doi: 10.1074/jbc.M111.248864. Epub, 2011 May 12. PMID:21566148
    Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (168 Kb) [Save to disk]
  • Biological Unit Coordinates (3kd5.pdb1.gz) 161 Kb
  • LPC: Ligand-Protein Contacts for 3KD5
  • CSU: Contacts of Structural Units for 3KD5
  • Structure Factors (1732 Kb)
  • Retrieve 3KD5 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3KD5 from S2C, [Save to disk]
  • Re-refined 3kd5 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 3KD5 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3kd5] [3kd5_E] [3kd5_P] [3kd5_T]
  • SWISS-PROT database:
  • Domain found in 3KD5: [POLBc ] by SMART

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