3KDE date
authors
compound source
symmetry
R_factor
R_Free
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution
ligand BRU, ZN enzyme
note 3KDE is a representative structure
Primary referenceTHAP proteins target specific DNA sites through bipartite recognition of adjacent major and minor grooves., Sabogal A, Lyubimov AY, Corn JE, Berger JM, Rio DC, Nat Struct Mol Biol. 2010 Jan;17(1):117-23. Epub 2009 Dec 13. PMID:20010837
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (28 Kb) [Save to disk]
  • Biological Unit Coordinates (3kde.pdb1.gz) 23 Kb
  • LPC: Ligand-Protein Contacts for 3KDE
  • CSU: Contacts of Structural Units for 3KDE
  • Structure Factors (166 Kb)
  • Retrieve 3KDE in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3KDE from S2C, [Save to disk]
  • Re-refined 3kde structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 3KDE in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3kde] [3kde_A] [3kde_B] [3kde_C]
  • SWISS-PROT database: [Q7M3K2]
  • Domain found in 3KDE: [DM3 ] by SMART

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