3KDI Hormone Receptor date Oct 22, 2009
title Structure Of (+)-Aba Bound Pyl2
authors P.Yin, H.Fan, Q.Hao, X.Yuan, N.Yan
compound source
Molecule: Putative Uncharacterized Protein At2g26040
Chain: A
Synonym: Pyl2
Engineered: Yes
Organism_scientific: Arabidopsis Thaliana
Organism_common: Mouse-Ear Cress
Organism_taxid: 3702
Expression_system: Escherichia Coli
Expression_system_taxid: 469008
Expression_system_strain: Bl21(De3)
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pet-15b
symmetry Space Group: P 61 2 2
R_factor 0.226 R_Free 0.281
length a length b length c angle alpha angle beta angle gamma
60.922 60.922 253.382 90.00 90.00 120.00
method X-Ray Diffractionresolution 2.38 Å
ligand A8S enzyme
  • protein phosphatase inhibito...

  • Primary referenceStructural insights into the mechanism of abscisic acid signaling by PYL proteins., Yin P, Fan H, Hao Q, Yuan X, Wu D, Pang Y, Yan C, Li W, Wang J, Yan N, Nat Struct Mol Biol. 2009 Dec;16(12):1230-6. Epub 2009 Nov 5. PMID:19893533
    Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (66 Kb) [Save to disk]
  • Biological Unit Coordinates (3kdi.pdb1.gz) 122 Kb
  • LPC: Ligand-Protein Contacts for 3KDI
  • CSU: Contacts of Structural Units for 3KDI
  • Structure Factors (186 Kb)
  • Retrieve 3KDI in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3KDI from S2C, [Save to disk]
  • Re-refined 3kdi structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 3KDI in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 3KDI
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 3KDI, from MSDmotif at EBI
  • Fold representative 3kdi from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3kdi] [3kdi_A]
  • SWISS-PROT database: [O80992]
  • Domain organization of [PYL2_ARATH] by SWISSPFAM
  • Other resources with information on 3KDI
  • Community annotation for 3KDI at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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