3KFC	Transcription	date	Oct 27, 2009
title	Complex Structure Of Lxr With An Agonist
authors	A.Olland, R.C.Bernotas, R.Unwalla
compound		source
Molecule: Oxysterols Receptor Lxr-Beta Chain: A, B, C, D Fragment: Ligand Binding Domain Synonym: Liver X Receptor Beta, Nuclear Orphan Receptor Lxr Nuclear Receptor Subfamily 1 Group H Member 2, Ubiquitously Nuclear Receptor, Nuclear Receptor Ner; Engineered: Yes		Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Gene: Nr1h2, Lxrb, Ner, Unr Expression_system: Escherichia Coli Expression_system_taxid: 562
symmetry	Space Group: P 21 21 21	R_factor 0.238 R_Free 0.284
crystal cell	length a length b length c angle alpha angle beta angle gamma 58.993 99.286 174.962 90.00 90.00 90.00
method	X-Ray Diffraction	resolution	2.40 Å
ligand	61X BindingDB	enzyme
Gene Ontology	Chain Function Process Component A, D, C, B
Primary reference	4-(3-Aryloxyaryl)quinoline sulfones are potent liver X receptor agonists., Bernotas RC, Singhaus RR, Kaufman DH, Travins JM, Ullrich JW, Unwalla R, Quinet E, Evans M, Nambi P, Olland A, Kauppi B, Wilhelmsson A, Goos-Nilsson A, Wrobel J, Bioorg Med Chem Lett. 2009 Oct 31. PMID:19932617

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (149 Kb) [Save to disk] Biological Unit Coordinates (3kfc.pdb1.gz) 76 Kb Biological Unit Coordinates (3kfc.pdb2.gz) 69 Kb LPC: Ligand-Protein Contacts for 3KFC CSU: Contacts of Structural Units for 3KFC Structure Factors (340 Kb) Retrieve 3KFC in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 3KFC from S2C, [Save to disk] Re-refined 3kfc structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 3KFC in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 3KFC

Ramachandran plot from PDBSum

Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 3KFC, from MSDmotif at EBI

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [3kfc_C] [3kfc_D] [3kfc_B] [3kfc] [3kfc_A] SWISS-PROT database: [P55055] Domain organization of [NR1H2_HUMAN] by SWISSPFAM Domain found in 3KFC: [HOLI ] by SMART

Other resources with information on 3KFC

Community annotation for 3KFC at PDBWiki (http://pdbwiki.org) MMDB (Entrez's Structure Database)

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