3KLI Transferase date Nov 08, 2009
title Crystal Structure Of Unliganded Azt-Resistant Hiv-1 Reverse Transcriptase
authors X.Tu, S.G.Sarafianos, E.Arnold
compound source
Molecule: Reverse Transcriptaseribonuclease H
Chain: A
Synonym: P66 Rt
Ec: 2.7.7.49, 2.7.7.7, 3.1.26.4
Engineered: Yes
Mutation: Yes
Organism_scientific: Human Immunodeficiency Virus Type 1
Organism_common: Hiv-1
Organism_taxid: 11678
Strain: Bh10
Gene: Gag-Pol
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_strain: Bl21(De3)
Expression_system_vector_type: Plasmid

Molecule: P51 Rt
Chain: B
Engineered: Yes
Mutation: Yes

Organism_scientific: Human Immunodeficiency Virus Type 1
Organism_common: Hiv-1
Organism_taxid: 11678
Strain: Bh10
Gene: Gag-Pol
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_strain: Bl21(De3)
Expression_system_vector_type: Plasmid
symmetry Space Group: C 1 2 1
R_factor 0.260 R_Free 0.294
crystal
cell
length a length b length c angle alpha angle beta angle gamma
237.066 71.222 94.626 90.00 106.00 90.00
method X-Ray Diffractionresolution 2.65 Å
ligand
enzyme Transferase E.C.2.7.7.49 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A


B


Primary referenceStructural basis of HIV-1 resistance to AZT by excision., Tu X, Das K, Han Q, Bauman JD, Clark AD Jr, Hou X, Frenkel YV, Gaffney BL, Jones RA, Boyer PL, Hughes SH, Sarafianos SG, Arnold E, Nat Struct Mol Biol. 2010 Oct;17(10):1202-9. Epub 2010 Sep 19. PMID:20852643
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (165 Kb) [Save to disk]
  • Biological Unit Coordinates (3kli.pdb1.gz) 160 Kb
  • CSU: Contacts of Structural Units for 3KLI
  • Structure Factors (330 Kb)
  • Retrieve 3KLI in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3KLI from S2C, [Save to disk]
  • Re-refined 3kli structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 3KLI in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 3KLI
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 3KLI, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3kli_A] [3kli] [3kli_B]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 3KLI
  • Community annotation for 3KLI at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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