3KMC	Hydrolase	date	Nov 10, 2009
title	Crystal Structure Of Catalytic Domain Of Tace With Tartrate- Inhibitor
authors	P.Orth
compound		source
Molecule: Tnf-Alpha-Converting Enzyme Chain: A, B Fragment: Residues 215-476 Synonym: Adam 17, Disintegrin And Metalloproteinase Domain- Protein 17, Tnf-Alpha Convertase, Snake Venom-Like Protease Ec: 3.4.24.86 Engineered: Yes Mutation: Yes		Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Gene: Adam17, Csvp, Tace Expression_system: Trichoplusia Ni Expression_system_taxid: 7111
symmetry	Space Group: P 21 21 21	R_factor 0.224 R_Free 0.259
crystal cell	length a length b length c angle alpha angle beta angle gamma 74.313 76.103 103.768 90.00 90.00 90.00
method	X-Ray Diffraction	resolution	1.80 Å
ligand	403, INN, ZN BindingDB	enzyme	Hydrolase E.C.3.4.24.86 BRENDA
Gene Ontology	Chain Function Process Component A, B
Primary reference	The discovery of novel tartrate-based TNF-alpha converting enzyme (TACE) inhibitors., Rosner KE, Guo Z, Orth P, Shipps GW Jr, Belanger DB, Chan TY, Curran PJ, Dai C, Deng Y, Girijavallabhan VM, Hong L, Lavey BJ, Lee JF, Li D, Liu Z, Popovici-Muller J, Ting PC, Vaccaro H, Wang L, Wang T, Yu W, Zhou G, Niu X, Sun J, Kozlowski JA, Lundell DJ, Madison V, McKittrick B, Piwinski JJ, Shih NY, Arshad Siddiqui M, Strickland CO, Bioorg Med Chem Lett. 2009 Dec 5. PMID:20022498

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (91 Kb) [Save to disk] Biological Unit Coordinates (3kmc.pdb1.gz) 45 Kb Biological Unit Coordinates (3kmc.pdb2.gz) 43 Kb LPC: Ligand-Protein Contacts for 3KMC CSU: Contacts of Structural Units for 3KMC Structure Factors (1175 Kb) Retrieve 3KMC in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 3KMC from S2C, [Save to disk] Re-refined 3kmc structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 3KMC in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 3KMC

Ramachandran plot from PDBSum

Structure-derived information

Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 3KMC, from MSDmotif at EBI

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [3kmc] [3kmc_A] [3kmc_B] SWISS-PROT database: [P78536] Belongs to the sheddase (sheddase) family according to TCDB. Domain organization of [ADA17_HUMAN] by SWISSPFAM

Other resources with information on 3KMC

Community annotation for 3KMC at PDBWiki (http://pdbwiki.org) MMDB (Entrez's Structure Database)

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