3KMT Viral Protein date Nov 11, 2009
title Crystal Structure Of Vsetsahh3 Ternary Complex
authors H.Wei, M.M.Zhou
compound source
Molecule: A612l Protein
Chain: A, B, C
 Organism_scientific: Paramecium Bursaria Chlorella Virus 1
Organism_common: Pbcv-1
Organism_taxid: 10506

Molecule: Histone H3
Chain: G, H, I
Fragment: Residues 26-33
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
symmetry Space Group: C 1 2 1
R_factor 0.196 R_Free 0.224
crystal
cell
length a length b length c angle alpha angle beta angle gamma
155.085 38.722 73.208 90.00 107.80 90.00
method X-Ray Diffractionresolution 1.78 Å
ligand MLZ, SAH enzyme
Gene
Ontology
ChainFunctionProcessComponent
A, C, B


Primary referenceDimerization of a viral SET protein endows its function., Wei H, Zhou MM, Proc Natl Acad Sci U S A. 2010 Oct 26;107(43):18433-8. Epub 2010 Oct 11. PMID:20937900
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (71 Kb) [Save to disk]
  • Biological Unit Coordinates (3kmt.pdb1.gz) 23 Kb
  • Biological Unit Coordinates (3kmt.pdb2.gz) 22 Kb
  • Biological Unit Coordinates (3kmt.pdb3.gz) 24 Kb
  • Biological Unit Coordinates (3kmt.pdb4.gz) 44 Kb
  • Biological Unit Coordinates (3kmt.pdb5.gz) 46 Kb
  • LPC: Ligand-Protein Contacts for 3KMT
  • CSU: Contacts of Structural Units for 3KMT
  • Structure Factors (297 Kb)
  • Retrieve 3KMT in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3KMT from S2C, [Save to disk]
  • Re-refined 3kmt structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 3KMT in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 3KMT
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 3KMT, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3kmt] [3kmt_G] [3kmt_H] [3kmt_A] [3kmt_I] [3kmt_C] [3kmt_B]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domain found in 3KMT: [SET ] by SMART
    • Other resources with information on 3KMT
  • Community annotation for 3KMT at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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