3KN5 Transferase date Nov 12, 2009
title Crystal Structure Of The C-Terminal Kinase Domain Of Msk1 In With Amp-Pnp
authors I.D'Angelo, M.Malakhova, Z.Dong
compound source
Molecule: Ribosomal Protein S6 Kinase Alpha-5
Chain: A, B
Fragment: Residues 414-738
Synonym: Nuclear Mitogen- And Stress-Activated Protein Kina Kda Ribosomal Protein S6 Kinase 5, Rsk-Like Protein Kinase,
Ec: 2.7.11.1
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Msk1, Rps6ka5
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_strain: Bl21-Codon Plus (De3)-Rilp
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pet28
symmetry Space Group: P 21 21 21
R_factor 0.208 R_Free 0.278
crystal
cell
length a length b length c angle alpha angle beta angle gamma
51.561 91.250 135.460 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.40 Å
ligand ANP enzyme Transferase E.C.2.7.11.1 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A, B


Primary referenceThe Crystal Structure of the Active Form of the C-Terminal Kinase Domain of Mitogen- and Stress-Activated Protein Kinase 1., Malakhova M, D'Angelo I, Kim HG, Kurinov I, Bode AM, Dong Z, J Mol Biol. 2010 Apr 9. PMID:20382163
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (99 Kb) [Save to disk]
  • Biological Unit Coordinates (3kn5.pdb1.gz) 48 Kb
  • Biological Unit Coordinates (3kn5.pdb2.gz) 49 Kb
  • LPC: Ligand-Protein Contacts for 3KN5
  • CSU: Contacts of Structural Units for 3KN5
  • Structure Factors (311 Kb)
  • Retrieve 3KN5 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3KN5 from S2C, [Save to disk]
  • Re-refined 3kn5 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 3KN5 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 3KN5
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 3KN5, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3kn5] [3kn5_B] [3kn5_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domain found in 3KN5: [S_TKc ] by SMART
  • Other resources with information on 3KN5
  • Community annotation for 3KN5 at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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