3KRD Hydrolase date Nov 18, 2009
title Crystal Structure Of Mycobacterium Tuberculosis Proteasome I With Fellutamide B
authors D.Li, H.Li
compound source
Molecule: Proteasome Subunit Alpha
Chain: A, B, D, F, I, K, M, O, Q, S, U, W, Y, 1
Fragment: 20s Proteasome Alpha Subunit
Synonym: Proteasome Core Protein Prca, 20s Proteasome Alpha
Ec: 3.4.25.1
Engineered: Yes
Organism_scientific: Mycobacterium Tuberculosis
Organism_taxid: 1773
Strain: H37rv
Gene: Mt2169, Prca, Rv2109c
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_strain: Bl21(De3)
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pacycduet

Molecule: Proteasome Subunit Beta
Chain: C, E, G, H, J, L, N, P, R, T, V, X, Z, 2
Fragment: 20s Proteasome Beta Subunit
Synonym: Proteasome Core Protein Prcb, 20s Proteasome Beta
Ec: 3.4.25.1
Engineered: Yes

Organism_scientific: Mycobacterium Tuberculosis
Organism_taxid: 1773
Strain: H37rv
Gene: Mt2170, Prcb, Rv2110c
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_strain: Bl21(De3)
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pacycduet
symmetry Space Group: P 1 21 1
R_factor 0.208 R_Free 0.229
crystal
cell
length a length b length c angle alpha angle beta angle gamma
170.186 118.099 194.347 90.00 112.62 90.00
method X-Ray Diffractionresolution 2.50 Å
ligand FEB enzyme Hydrolase E.C.3.4.25.1 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
S, F, K, Y, Q, 1, M, A, O, W, B, D, I, U


T, N, E, 2, V, Z, C, L, J, X, P, H, R, G


Primary referenceFellutamide B is a potent inhibitor of the Mycobacterium tuberculosis proteasome., Lin G, Li D, Chidawanyika T, Nathan C, Li H, Arch Biochem Biophys. 2010 Sep 15;501(2):214-20. Epub 2010 Jun 15. PMID:20558127
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (993 Kb) [Save to disk]
  • Biological Unit Coordinates (3krd.pdb1.gz) 981 Kb
  • LPC: Ligand-Protein Contacts for 3KRD
  • CSU: Contacts of Structural Units for 3KRD
  • Structure Factors (1407 Kb)
  • Retrieve 3KRD in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3KRD from S2C, [Save to disk]
  • Re-refined 3krd structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 3KRD in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 3KRD
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 3KRD, from MSDmotif at EBI
  • Fold representative 3krd from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3krd_W] [3krd_X] [3krd_D] [3krd] [3krd_P] [3krd_A] [3krd_O] [3krd_E] [3krd_Y] [3krd_R] [3krd_F] [3krd_N] [3krd_U] [3krd_T] [3krd_1] [3krd_G] [3krd_H] [3krd_Q] [3krd_S] [3krd_I] [3krd_B] [3krd_M] [3krd_C] [3krd_K] [3krd_J] [3krd_V] [3krd_Z] [3krd_L] [3krd_2]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 3KRD
  • Community annotation for 3KRD at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

  • You may enter another PDB ID code
    Go [Back], to the [PDB Lite page], to the [OCA Search page] or to the [PDB Home page]
    OCA© by Jaime Prilusky, 1996-2014
    Bioinformatics Unit
    Weizmann Institute of Science