3KRJ	Transferase Transferase Inhibitor	date	Nov 18, 2009
title	Cfms Tyrosine Kinase In Complex With 4-Cyano-1h-Imidazole-2- Acid (2-Cyclohex-1-Enyl-4-Piperidin-4-Yl-Phenyl)-Amide
authors	C.Schubert
compound		source
Molecule: Macrophage Colony-Stimulating Factor 1 Receptor, Fibroblast Growth Factor Receptor 1; Chain: A Fragment: Unp Residues 538-678, 753-922 Synonym: C-Fms, Fgfr-1 Ec: 2.7.10.1 Engineered: Yes Mutation: Yes Other_details: Native Kinase Insert Domain Of C-Fms Replace Receptor Kinase Insert Domain		Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Gene: Csf1r, Fms, Fgfr1 Expression_system: Spodoptera Frugiperda Expression_system_taxid: 7108
symmetry	Space Group: H 3	R_factor 0.208 R_Free 0.260
crystal cell	length a length b length c angle alpha angle beta angle gamma 82.875 82.875 144.408 90.00 90.00 120.00
method	X-Ray Diffraction	resolution	2.10 Å
ligand	ACT, KRJ	enzyme	Transferase E.C.2.7.10.1 BRENDA
Gene Ontology	Chain Function Process Component A
Primary reference	Optimization of a Potent Class of Arylamide Colony-Stimulating Factor-1 Receptor Inhibitors Leading to Anti-inflammatory Clinical Candidate 4-Cyano-N-[2-(1-cyclohexen-1-yl)-4-[1-[(dimethylamino)acetyl]-4-piperidiny l]phenyl]-1H-imidazole-2-carboxamide (JNJ-28312141)., Illig CR, Manthey CL, Wall MJ, Meegalla SK, Chen J, Wilson KJ, Ballentine SK, Desjarlais RL, Schubert C, Crysler CS, Chen Y, Molloy CJ, Chaikin MA, Donatelli RR, Yurkow E, Zhou Z, Player MR, Tomczuk BE, J Med Chem. 2011 Nov 24;54(22):7860-83. Epub 2011 Oct 31. PMID:22039836

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (153 Kb) [Save to disk] Biological Unit Coordinates (3krj.pdb1.gz) 148 Kb LPC: Ligand-Protein Contacts for 3KRJ CSU: Contacts of Structural Units for 3KRJ Structure Factors (300 Kb) Retrieve 3KRJ in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 3KRJ from S2C, [Save to disk] Re-refined 3krj structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 3KRJ in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 3KRJ

Ramachandran plot from PDBSum

Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 3KRJ, from MSDmotif at EBI

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [3krj] [3krj_A] SWISS-PROT database: Domain organization of by SWISSPFAM Domain found in 3KRJ: [TyrKc ] by SMART

Other resources with information on 3KRJ

Community annotation for 3KRJ at PDBWiki (http://pdbwiki.org) MMDB (Entrez's Structure Database)

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