3KU2 Transferase date Nov 26, 2009
title Crystal Structure Of Inactivated Form Of Cdpk1 From Toxoplas Tgme49.101440
authors A.K.Wernimont, J.D.Artz, P.Finnerty, T.Xiao, H.He, F.Mackenzie, G.Sinestera, A.A.Hassani, G.Wasney, M.Vedadi, S.Lourido, A.Bochk C.H.Arrowsmith, A.M.Edwards, C.Bountra, J.Weigelt, D.L.Sibley, R Y.H.Lin, Structural Genomics Consortium (Sgc)
compound source
Molecule: Calmodulin-Domain Protein Kinase 1
Chain: A
Engineered: Yes
Organism_scientific: Toxoplasma Gondii
Organism_taxid: 5811
Gene: Cdpk1, Tgme49_101440
Expression_system: Escherichia Coli
Expression_system_taxid: 562
symmetry Space Group: P 1 21 1
R_factor 0.198 R_Free 0.237
crystal
cell
length a length b length c angle alpha angle beta angle gamma
48.010 72.912 65.018 90.00 96.26 90.00
method X-Ray Diffractionresolution 2.30 Å
ligand ANP, UNX enzyme
Gene TGME49
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceStructures of apicomplexan calcium-dependent protein kinases reveal mechanism of activation by calcium., Wernimont AK, Artz JD, Finerty P Jr, Lin YH, Amani M, Allali-Hassani A, Senisterra G, Vedadi M, Tempel W, Mackenzie F, Chau I, Lourido S, Sibley LD, Hui R, Nat Struct Mol Biol. 2010 May;17(5):596-601. Epub 2010 May 2. PMID:20436473
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (79 Kb) [Save to disk]
  • Biological Unit Coordinates (3ku2.pdb1.gz) 74 Kb
  • LPC: Ligand-Protein Contacts for 3KU2
  • CSU: Contacts of Structural Units for 3KU2
  • Structure Factors (394 Kb)
  • Retrieve 3KU2 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3KU2 from S2C, [Save to disk]
  • Re-refined 3ku2 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 3KU2 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 3KU2
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 3KU2, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3ku2] [3ku2_A]
  • SWISS-PROT database: [Q9BJF5]
  • Domain organization of [Q9BJF5_TOXGO] by SWISSPFAM
  • Domains found in 3KU2: [EFh] [S_TKc ] by SMART
  • Other resources with information on 3KU2
  • Community annotation for 3KU2 at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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