3KUD date
authors
compound source
symmetry
R_factor
R_Free
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution
ligand GDP, MG enzyme
note 3KUD (Molecule of the Month:pdb195)
Gene
Ontology
ChainFunctionProcessComponent
A


B


Primary referenceWhat makes Ras an efficient molecular switch: a computational, biophysical, and structural study of Ras-GDP interactions with mutants of Raf., Filchtinski D, Sharabi O, Ruppel A, Vetter IR, Herrmann C, Shifman JM, J Mol Biol. 2010 Jun 11;399(3):422-35. Epub 2010 Mar 31. PMID:20361980
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (47 Kb) [Save to disk]
  • Biological Unit Coordinates (3kud.pdb1.gz) 40 Kb
  • LPC: Ligand-Protein Contacts for 3KUD
  • CSU: Contacts of Structural Units for 3KUD
  • Structure Factors (197 Kb)
  • Retrieve 3KUD in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3KUD from S2C, [Save to disk]
  • Re-refined 3kud structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 3KUD in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3kud] [3kud_A] [3kud_B]
  • SWISS-PROT database:
  • Domains found in 3KUD: [RAS] [RBD ] by SMART

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