3KYL Nucleic Acid Binding Protein Dna Rna date Dec 06, 2009
title Structure Of The Catalytic Subunit Of Telomerase Bound To It Template And Telomeric Dna
authors E.Skordalakes
compound source
Molecule: Telomerase Reverse Transcriptase
Chain: A
Engineered: Yes
Organism_scientific: Tribolium Castaneum
Organism_common: Rust-Red Flour Beetle
Organism_taxid: 7070
Gene: Tert
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_strain: Roseta (Plyss)
Expression_system_vector_type: Pet28b

Molecule: Dnarna (5'-R(Cpupgpapcpcpupgpapc)- D(Ptptpcpgpgptpcpapgpgptpcpapg)-3');
Chain: E
Engineered: Yes

Synthetic: Yes
symmetry Space Group: P 1 21 1
R_factor 0.242 R_Free 0.287
crystal
cell
length a length b length c angle alpha angle beta angle gamma
77.231 52.782 101.609 90.00 101.90 90.00
method X-Ray Diffractionresolution 2.70 Å
ligand MG enzyme
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceStructural basis for telomerase catalytic subunit TERT binding to RNA template and telomeric DNA., Mitchell M, Gillis A, Futahashi M, Fujiwara H, Skordalakes E, Nat Struct Mol Biol. 2010 Apr;17(4):513-8. Epub 2010 Mar 28. PMID:20357774
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (115 Kb) [Save to disk]
  • Biological Unit Coordinates (3kyl.pdb1.gz) 109 Kb
  • LPC: Ligand-Protein Contacts for 3KYL
  • CSU: Contacts of Structural Units for 3KYL
  • Structure Factors (245 Kb)
  • Retrieve 3KYL in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3KYL from S2C, [Save to disk]
  • Re-refined 3kyl structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 3KYL in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 3KYL
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 3KYL, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3kyl_A] [3kyl] [3kyl_E]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 3KYL
  • Community annotation for 3KYL at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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