3L16 Transferase date Dec 10, 2009
title Discovery Of (Thienopyrimidin-2-Yl)Aminopyrimidines As Poten Selective, And Orally Available Pan-Pi3-Kinase And Dual Pan Kinasemtor Inhibitors For The Treatment Of Cancer
authors J.M.Murray, C.Wiesmann
compound source
Molecule: Phosphatidylinositol-4,5-Bisphosphate 3-Kinase Ca Subunit Gamma Isoform;
Chain: A
Fragment: Unp Residues 144-1102
Synonym: Pi3-Kinase P110 Subunit Gamma, Ptdins-3-Kinase Sub Pi3kgamma, Pi3k, P120-Pi3k;
Ec: 2.7.1.153
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Pik3cg
Expression_system: Spodoptera Frugiperda
Expression_system_common: Fall Armyworm
Expression_system_taxid: 7108
Expression_system_strain: Sf9
Expression_system_vector_type: Plasmid
symmetry Space Group: C 1 2 1
R_factor 0.238 R_Free 0.295
crystal
cell
length a length b length c angle alpha angle beta angle gamma
142.635 67.391 106.674 90.00 96.11 90.00
method X-Ray Diffractionresolution 2.90 Å
ligand JZX BindingDB enzyme Transferase E.C.2.7.1.153 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceDiscovery of (Thienopyrimidin-2-yl)aminopyrimidines as Potent, Selective, and Orally Available Pan-PI3-Kinase and Dual Pan-PI3-Kinase/mTOR Inhibitors for the Treatment of Cancer., Sutherlin DP, Sampath D, Berry M, Castanedo G, Chang Z, Chuckowree I, Dotson J, Folkes A, Friedman L, Goldsmith R, Heffron T, Lee L, Lesnick J, Lewis C, Mathieu S, Nonomiya J, Olivero A, Pang J, Prior WW, Salphati L, Sideris S, Tian Q, Tsui V, Wan NC, Wang S, Wiesmann C, Wong S, Zhu BY, J Med Chem. 2010 Feb 11;53(3):1086-97. PMID:20050669
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (144 Kb) [Save to disk]
  • Biological Unit Coordinates (3l16.pdb1.gz) 137 Kb
  • LPC: Ligand-Protein Contacts for 3L16
  • CSU: Contacts of Structural Units for 3L16
  • Structure Factors (338 Kb)
  • Retrieve 3L16 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3L16 from S2C, [Save to disk]
  • Re-refined 3l16 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 3L16 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 3L16
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 3L16, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3l16_A] [3l16]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domains found in 3L16: [PI3K_C2] [PI3K_rbd] [PI3Ka] [PI3Kc ] by SMART
  • Other resources with information on 3L16
  • Community annotation for 3L16 at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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