3L3L	Transferase Transferase Inhibitor	date	Dec 17, 2009
title	Parp Complexed With A906894
authors	C.H.Park
compound		source
Molecule: Poly [Adp-Ribose] Polymerase 1 Chain: A Fragment: Residues 662-1011 Synonym: Parp-1, Adprt, Nad(+) Adp-Ribosyltransferase 1, Po Ribose] Synthetase 1; Ec: 2.4.2.30 Engineered: Yes Mutation: Yes		Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Gene: Parp1, Adprt, Ppol Expression_system: Escherichia Coli Expression_system_taxid: 562
symmetry	Space Group: P 3 2 1	R_factor 0.210 R_Free 0.285
crystal cell	length a length b length c angle alpha angle beta angle gamma 94.023 94.023 68.773 90.00 90.00 120.00
method	X-Ray Diffraction	resolution	2.50 Å
ligand	L3L BindingDB	enzyme	Transferase E.C.2.4.2.30 BRENDA
Gene Ontology	Chain Function Process Component A
Primary reference	Discovery and SAR of substituted 3-oxoisoindoline-4-carboxamides as potent inhibitors of poly(ADP-ribose) polymerase (PARP) for the treatment of cancer., Gandhi VB, Luo Y, Liu X, Shi Y, Klinghofer V, Johnson EF, Park C, Giranda VL, Penning TD, Zhu GD, Bioorg Med Chem Lett. 2010 Feb 1;20(3):1023-6. Epub 2009 Dec 14. PMID:20045315

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (63 Kb) [Save to disk] Biological Unit Coordinates (3l3l.pdb1.gz) 58 Kb Biological Unit Coordinates (3l3l.pdb2.gz) 336 Kb LPC: Ligand-Protein Contacts for 3L3L CSU: Contacts of Structural Units for 3L3L Structure Factors (93 Kb) Retrieve 3L3L in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 3L3L from S2C, [Save to disk] Re-refined 3l3l structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 3L3L in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 3L3L

Ramachandran plot from PDBSum

Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 3L3L, from MSDmotif at EBI

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [3l3l] [3l3l_A] SWISS-PROT database: Domain organization of by SWISSPFAM

Other resources with information on 3L3L

Community annotation for 3L3L at PDBWiki (http://pdbwiki.org) MMDB (Entrez's Structure Database)

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