3L6I Structure Genomics, Unknown Function date Dec 23, 2009
title Crystal Structure Of The Uncharacterized Lipoprotein Yceb Fr At The Resolution 2.0a. Northeast Structural Genomics Conso Target Er542
authors A.P.Kuzin, H.Neely, J.Seetharaman, C.X.Chen, H.Janjua, K.Cunningh C.Ma, R.Xiao, J.Liu, M.C.Baran, T.B.Acton, B.Rost, G.T.Montelione J.F.Hunt, Northeast Structural Genomics Consortium (Nesg)
compound source
Molecule: Uncharacterized Lipoprotein Yceb
Chain: A, B
Engineered: Yes
 Organism_scientific: Escherichia Coli
Organism_taxid: 83333
Strain: K12
Gene: Yceb, B1063, Jw1050
Expression_system: Escherichia Coli
Expression_system_taxid: 469008
Expression_system_strain: Bl21(De3) + Magic
symmetry Space Group: C 2 2 2
R_factor 0.205 R_Free 0.247
crystal
cell
length a length b length c angle alpha angle beta angle gamma
109.050 174.550 43.800 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.01 Å
ligand MSE, NA enzyme
note 3L6I supersedes 3EYR
Gene
Ontology
ChainFunctionProcessComponent
A, B


Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (124 Kb) [Save to disk]
  • Biological Unit Coordinates (3l6i.pdb1.gz) 60 Kb
  • Biological Unit Coordinates (3l6i.pdb2.gz) 61 Kb
  • Biological Unit Coordinates (3l6i.pdb3.gz) 119 Kb
  • LPC: Ligand-Protein Contacts for 3L6I
  • CSU: Contacts of Structural Units for 3L6I
  • Structure Factors (391 Kb)
  • Retrieve 3L6I in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3L6I from S2C, [Save to disk]
  • Re-refined 3l6i structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 3L6I in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 3L6I
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 3L6I, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3l6i] [3l6i_B] [3l6i_A]
  • SWISS-PROT database: [P0AB26]
  • Domain organization of [YCEB_ECOLI] by SWISSPFAM
    • Other resources with information on 3L6I
  • Community annotation for 3L6I at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

    • You may enter another PDB ID code
    Go [Back], to the [PDB Lite page], to the [OCA Search page] or to the [PDB Home page]
    OCA© by Jaime Prilusky, 1996-2014,2022
    Bioinformatics Unit
    Weizmann Institute of Science