3L89	Viral Protein Protein Binding	date	Dec 30, 2009
title	Human Adenovirus Type 21 Knob In Complex With Domains Scr1 A Cd46 (Membrane Cofactor Protein, Mcp)
authors	K.Cupelli, T.Stehle
compound		source
Molecule: Fiber Protein Chain: A, B, C, D, E, F, G, H, I, J, K, L Fragment: Ad21 Fiber Knob (Unp Residues 123-323) Engineered: Yes		Organism_scientific: Human Adenovirus 21 Organism_taxid: 32608 Strain: 2145 Gene: 32608, L5 Expression_system: Escherichia Coli Expression_system_taxid: 562 Expression_system_strain: Rosetta2 (De3) Expression_system_vector_type: Plasmid Expression_system_plasmid: Pet15b
Molecule: Membrane Cofactor Protein Chain: M, N, O, P, Q, R, S, T, U, V, W, X Fragment: Cd46 Scr1 And Scr2 Domains (Unp Residues 35-160) Synonym: Trophoblast Leukocyte Common Antigen, Tlx Engineered: Yes		Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Gene: 9606, Cd46, Mcp, Mic10 Expression_system: Cricetulus Griseus Expression_system_taxid: 10029 Expression_system_strain: Cho-Lec3281 Expression_system_vector_type: Plasmid Expression_system_plasmid: Pbj5
symmetry	Space Group: P 1	R_factor 0.204 R_Free 0.239
crystal cell	length a length b length c angle alpha angle beta angle gamma 94.530 107.710 154.100 90.01 90.10 104.70
method	X-Ray Diffraction	resolution	3.50 Å
ligand	NAG	enzyme
Gene Ontology	Chain Function Process Component F, A, J, K, E, B, H, C, D, I, G, L
Primary reference	Structure of adenovirus type 21 knob in complex with CD46 reveals key differences in receptor contacts among species B adenoviruses., Cupelli K, Muller S, Persson BD, Jost M, Arnberg N, Stehle T, J Virol. 2010 Apr;84(7):3189-200. Epub 2010 Jan 13. PMID:20071571

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (580 Kb) [Save to disk] Biological Unit Coordinates (3l89.pdb1.gz) 148 Kb Biological Unit Coordinates (3l89.pdb2.gz) 149 Kb Biological Unit Coordinates (3l89.pdb3.gz) 148 Kb Biological Unit Coordinates (3l89.pdb4.gz) 149 Kb LPC: Ligand-Protein Contacts for 3L89 CSU: Contacts of Structural Units for 3L89 Structure Factors (598 Kb) Retrieve 3L89 in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 3L89 from S2C, [Save to disk] Re-refined 3l89 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

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Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 3L89, from MSDmotif at EBI

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [3l89_L] [3l89_W] [3l89_D] [3l89_G] [3l89_F] [3l89_X] [3l89_H] [3l89_U] [3l89_O] [3l89_I] [3l89_C] [3l89_M] [3l89_Q] [3l89_R] [3l89_S] [3l89_N] [3l89_J] [3l89_B] [3l89_E] [3l89_V] [3l89_A] [3l89_T] [3l89_P] [3l89_K] [3l89] SWISS-PROT database: Domain organization of by SWISSPFAM Domain found in 3L89: [CCP ] by SMART

Other resources with information on 3L89

Community annotation for 3L89 at PDBWiki (http://pdbwiki.org) MMDB (Entrez's Structure Database)

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