3L8K Oxidoreductase date Dec 31, 2009
title Crystal Structure Of A Dihydrolipoyl Dehydrogenase From Sulf Solfataricus
authors J.B.Bonanno, M.Rutter, K.T.Bain, S.Miller, P.Sampathkumar, S.Wass J.M.Sauder, S.K.Burley, S.C.Almo, New York Sgx Research Center Structural Genomics (Nysgxrc)
compound source
Molecule: Dihydrolipoyl Dehydrogenase
Chain: A, B
Ec: 1.8.1.4
Engineered: Yes
 Organism_scientific: Sulfolobus Solfataricus
Organism_taxid: 2287
Gene: Pdhd-3, Sso1565
Expression_system: Escherichia Coli
Expression_system_taxid: 469008
Expression_system_strain: Bl21(De3)
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Modified Pet26
symmetry Space Group: I 21 21 21
R_factor 0.193 R_Free 0.243
crystal
cell
length a length b length c angle alpha angle beta angle gamma
114.186 126.737 165.993 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.50 Å
ligand ADP, PO4 enzyme Oxidoreductase E.C.1.8.1.4 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A, B


Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (148 Kb) [Save to disk]
  • Biological Unit Coordinates (3l8k.pdb1.gz) 277 Kb
  • LPC: Ligand-Protein Contacts for 3L8K
  • CSU: Contacts of Structural Units for 3L8K
  • Structure Factors (2269 Kb)
  • Retrieve 3L8K in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3L8K from S2C, [Save to disk]
  • Re-refined 3l8k structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 3L8K in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 3L8K
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 3L8K, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3l8k] [3l8k_B] [3l8k_A]
  • SWISS-PROT database: [Q97XZ3]
  • Domain organization of [Q97XZ3_SULSO] by SWISSPFAM
    • Other resources with information on 3L8K
  • Community annotation for 3L8K at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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