3LDB date
authors
compound source
symmetry
R_factor
R_Free
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution
ligand AKG, FE, GOL, HG, SO4 enzyme
Primary referenceInteraction of JMJD6 with single-stranded RNA., Hong X, Zang J, White J, Wang C, Pan CH, Zhao R, Murphy RC, Dai S, Henson P, Kappler JW, Hagman J, Zhang G, Proc Natl Acad Sci U S A. 2010 Aug 17;107(33):14568-72. Epub 2010 Aug 2. PMID:20679243
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (132 Kb) [Save to disk]
  • Biological Unit Coordinates (3ldb.pdb1.gz) 125 Kb
  • LPC: Ligand-Protein Contacts for 3LDB
  • CSU: Contacts of Structural Units for 3LDB
  • Structure Factors (354 Kb)
  • Retrieve 3LDB in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3LDB from S2C, [Save to disk]
  • Re-refined 3ldb structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 3LDB in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3ldb] [3ldb_A] [3ldb_B] [3ldb_C]
  • SWISS-PROT database:
  • Domains found in 3LDB: [IG_like] [IGv] [JmjC ] by SMART

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