3LOB Virus date Feb 03, 2010
title Crystal Structure Of Flock House Virus Calcium Mutant
authors J.E.Johnson, M.Banerjee, J.A.Speir, R.Huang
compound source
Molecule: Coat Protein Beta
Chain: A, B, C
Synonym: Coat Protein Beta, Nodavirus Endopeptidase, Coat P Gamma;
Ec: 3.4.23.44
Engineered: Yes
Mutation: Yes
Organism_scientific: Flock House Virus
Organism_common: Fhv
Organism_taxid: 12287
Gene: Alpha, Flock House Virus Coat Protein Alpha
Expression_system: Spodoptera Frugiperda
Expression_system_taxid: 7108
Expression_system_vector_type: Baculovirus
Expression_system_plasmid: Pbacpak9

Molecule: Coat Protein Gamma
Chain: D, E, F
Synonym: Coat Protein Beta, Nodavirus Endopeptidase, Coat P Gamma;
Engineered: Yes

Organism_scientific: Flock House Virus
Organism_common: Fhv
Organism_taxid: 12287
Gene: Alpha, Flock House Virus Coat Protein Alpha
Expression_system: Spodoptera Frugiperda
Expression_system_taxid: 7108
Expression_system_vector_type: Baculovirus
Expression_system_plasmid: Pbacpak9

Molecule: Rna (5'-R(Upupuapupcpup(P))-3')
Chain: R
Engineered: Yes

Organism_scientific: Spodoptera Frugiperda
Organism_taxid: 7108
Expression_system: Spodoptera Frugiperda
Expression_system_taxid: 7108
symmetry Space Group: C 1 2 1
R_factor 0.347 R_Free NULL
crystal
cell
length a length b length c angle alpha angle beta angle gamma
477.088 404.929 476.189 90.00 90.63 90.00
method X-Ray Diffractionresolution 3.60 Å
ligand SO4 enzyme Hydrolase E.C.3.4.23.44 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
F, A, D, C, E, B


Primary referenceStructure and function of a genetically engineered mimic of a nonenveloped virus entry intermediate., Banerjee M, Speir JA, Kwan MH, Huang R, Aryanpur PP, Bothner B, Johnson JE, J Virol. 2010 May;84(9):4737-46. Epub 2010 Feb 17. PMID:20164221
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (147 Kb) [Save to disk]
  • Biological Unit Coordinates (3lob.pdb1.gz) 8025 Kb
  • LPC: Ligand-Protein Contacts for 3LOB
  • CSU: Contacts of Structural Units for 3LOB
  • Structure Factors (4242 Kb)
  • Retrieve 3LOB in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3LOB from S2C, [Save to disk]
  • View 3LOB in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 3LOB
  • VIPERdb: visual, structural and computational analysis of 3LOB
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 3LOB, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3lob] [3lob_E] [3lob_F] [3lob_R] [3lob_B] [3lob_A] [3lob_C] [3lob_D]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 3LOB
  • Community annotation for 3LOB at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

  • You may enter another PDB ID code
    Go [Back], to the [PDB Lite page], to the [OCA Search page] or to the [PDB Home page]
    OCA© by Jaime Prilusky, 1996-2014,2022
    Bioinformatics Unit
    Weizmann Institute of Science