3LQ9	Signaling Protein	date	Feb 08, 2010
title	Crystal Structure Of Human Redd1, A Hypoxia-Induced Regulato
authors	S.Vega-Rubin-De-Celis, Z.Abdallah, J.Brugarolas, X.Zhang
compound		source
Molecule: Dna-Damage-Inducible Transcript 4 Protein Chain: A, B Fragment: C-Terminal Functional Domain Synonym: Protein Regulated In Development And Dna Damage Re Redd-1, Hif-1 Responsive Protein Rtp801; Engineered: Yes Mutation: Yes		Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Gene: Ddit4, Redd1, Rtp801 Expression_system: Escherichia Coli Expression_system_taxid: 562 Expression_system_strain: Bl21(De3) Expression_system_vector_type: Plasmid Expression_system_plasmid: Modified Pet28 With A His6-Sumo
symmetry	Space Group: P 1	R_factor 0.177 R_Free 0.214
crystal cell	length a length b length c angle alpha angle beta angle gamma 33.331 36.586 47.970 77.56 89.08 86.18
method	X-Ray Diffraction	resolution	2.00 Å
ligand	MSE	enzyme
note	3LQ9 is a representative structure
Gene Ontology	Chain Function Process Component A, B
Primary reference	Structural Analysis and Functional Implications of the Negative mTORC1 Regulator REDD1 (,)., Vega-Rubin-de-Celis S, Abdallah Z, Kinch L, Grishin NV, Brugarolas J, Zhang X, Biochemistry. 2010 Mar 2. PMID:20166753

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (48 Kb) [Save to disk] Biological Unit Coordinates (3lq9.pdb1.gz) 23 Kb Biological Unit Coordinates (3lq9.pdb2.gz) 22 Kb LPC: Ligand-Protein Contacts for 3LQ9 CSU: Contacts of Structural Units for 3LQ9 Structure Factors (384 Kb) Retrieve 3LQ9 in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 3LQ9 from S2C, [Save to disk] Re-refined 3lq9 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 3LQ9 in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 3LQ9

Ramachandran plot from PDBSum

Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 3LQ9, from MSDmotif at EBI

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [3lq9_A] [3lq9_B] [3lq9] SWISS-PROT database: Domain organization of by SWISSPFAM

Other resources with information on 3LQ9

Community annotation for 3LQ9 at PDBWiki (http://pdbwiki.org) MMDB (Entrez's Structure Database)

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