3LQW Hydrolase date Feb 10, 2010
title Crystal Structure Of Deoxyuridine 5-Triphosphate Nucleotidoh From Entamoeba Histolytica
authors Seattle Structural Genomics Center For Infectious Disease (S
compound source
Molecule: Deoxyuridine 5'-Triphosphate Nucleotidohydrolase
Chain: A
Engineered: Yes
 Organism_scientific: Entamoeba Histolytica
Organism_taxid: 294381
Strain: Hm-1:Imss
Gene: Ehi_189420
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_strain: Bl21(De3)
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Ava0421
symmetry Space Group: H 3
R_factor 0.132 R_Free 0.155
crystal
cell
length a length b length c angle alpha angle beta angle gamma
63.140 63.140 108.370 90.00 90.00 120.00
method X-Ray Diffractionresolution 1.30 Å
ligand EDO, GOL enzyme
note 3LQW is a representative structure
Gene EHI
Gene
Ontology
ChainFunctionProcessComponent
A


Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (55 Kb) [Save to disk]
  • Biological Unit Coordinates (3lqw.pdb1.gz) 147 Kb
  • LPC: Ligand-Protein Contacts for 3LQW
  • CSU: Contacts of Structural Units for 3LQW
  • Structure Factors (574 Kb)
  • Retrieve 3LQW in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3LQW from S2C, [Save to disk]
  • Re-refined 3lqw structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 3LQW in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 3LQW
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 3LQW, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3lqw] [3lqw_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
    • Other resources with information on 3LQW
  • Community annotation for 3LQW at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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