3LSU Oxidoreductase date Feb 12, 2010
title Crystal Structure Of Sod2 From Saccharomyces Cerevisiae
authors Y.Sheng, D.Cascio, J.S.Valentine
compound source
Molecule: Superoxide Dismutase [Mn], Mitochondrial
Chain: A, B, C, D
Ec: 1.15.1.1
Engineered: Yes
Organism_scientific: Saccharomyces Cerevisiae
Organism_common: Yeast
Organism_taxid: 4932
Gene: Sod2, Yhr008c
Expression_system: Saccharomyces Cerevisiae
Expression_system_common: Yeast
Expression_system_taxid: 4932
Expression_system_strain: Eg103
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Yep352-Sod2
symmetry Space Group: P 1
R_factor 0.162 R_Free 0.195
crystal
cell
length a length b length c angle alpha angle beta angle gamma
63.657 64.933 66.550 109.36 106.35 109.68
method X-Ray Diffractionresolution 1.90 Å
ligand GOL, MLY, MN, NA enzyme Oxidoreductase E.C.1.15.1.1 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A, D, C, B


Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (150 Kb) [Save to disk]
  • Biological Unit Coordinates (3lsu.pdb1.gz) 140 Kb
  • LPC: Ligand-Protein Contacts for 3LSU
  • CSU: Contacts of Structural Units for 3LSU
  • Structure Factors (957 Kb)
  • Retrieve 3LSU in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3LSU from S2C, [Save to disk]
  • Re-refined 3lsu structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 3LSU in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 3LSU
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 3LSU, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3lsu_C] [3lsu_B] [3lsu_D] [3lsu] [3lsu_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 3LSU
  • Community annotation for 3LSU at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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