3LZ0	Structural Protein Dna	date	Mar 01, 2010
title	Crystal Structure Of Nucleosome Core Particle Composed Of Th 601 Dna Sequence (Orientation 1)
authors	D.Vasudevan, E.Y.D.Chua, C.A.Davey
compound		source
Molecule: Histone H3.2 Chain: A, E Engineered: Yes		Organism_scientific: Xenopus Laevis Organism_common: African Clawed Frog Organism_taxid: 8355 Expression_system: Escherichia Coli Expression_system_taxid: 562 Expression_system_strain: Bl21(Plyss) Expression_system_vector_type: Plasmid Expression_system_plasmid: Pet3d
Molecule: Histone H4 Chain: B, F Engineered: Yes		Organism_scientific: Xenopus Laevis Organism_common: African Clawed Frog Organism_taxid: 8355 Expression_system: Escherichia Coli Expression_system_taxid: 562 Expression_system_strain: Bl21(Plyss) Expression_system_vector_type: Plasmid Expression_system_plasmid: Pet3a
Molecule: Histone H2a Chain: C, G Fragment: Residues 2-120 Engineered: Yes		Organism_scientific: Xenopus Laevis Organism_common: African Clawed Frog Organism_taxid: 8355 Expression_system: Escherichia Coli Expression_system_taxid: 562 Expression_system_strain: Bl21(Plyss) Expression_system_vector_type: Plasmid Expression_system_plasmid: Pet3a
Molecule: Histone H2b 1.1 Chain: D, H Synonym: H2b1.1 Engineered: Yes		Organism_scientific: Xenopus Laevis Organism_common: African Clawed Frog Organism_taxid: 8355 Expression_system: Escherichia Coli Expression_system_taxid: 562 Expression_system_strain: Bl21(Plyss) Expression_system_vector_type: Plasmid Expression_system_plasmid: Pet3a
Molecule: Dna (145-Mer) Chain: I Engineered: Yes		Synthetic: Yes Other_details: Synthetic Construct
Molecule: Dna (145-Mer) Chain: J Engineered: Yes		Synthetic: Yes Other_details: Synthetic Construct
symmetry	Space Group: P 21 21 21	R_factor 0.268 R_Free 0.318
crystal cell	length a length b length c angle alpha angle beta angle gamma 107.370 109.660 175.750 90.00 90.00 90.00
method	X-Ray Diffraction	resolution	2.50 Å
ligand	CL, MN	enzyme
Gene Ontology	Chain Function Process Component A, E C, G F, B H, D
Primary reference	Crystal Structures of Nucleosome Core Particles Containing the '601' Strong Positioning Sequence., Vasudevan D, Chua EY, Davey CA, J Mol Biol. 2010 Aug 26. PMID:20800598

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (240 Kb) [Save to disk] Biological Unit Coordinates (3lz0.pdb1.gz) 232 Kb LPC: Ligand-Protein Contacts for 3LZ0 CSU: Contacts of Structural Units for 3LZ0 Structure Factors (3355 Kb) Retrieve 3LZ0 in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 3LZ0 from S2C, [Save to disk] Re-refined 3lz0 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 3LZ0 in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 3LZ0

Ramachandran plot from PDBSum

Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 3LZ0, from MSDmotif at EBI

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [3lz0_F] [3lz0_A] [3lz0_C] [3lz0_B] [3lz0_D] [3lz0] [3lz0_E] [3lz0_G] [3lz0_I] [3lz0_J] [3lz0_H] SWISS-PROT database: Domain organization of by SWISSPFAM Domains found in 3LZ0: [H2A] [H2B] [H3] [H4 ] by SMART

Other resources with information on 3LZ0

Community annotation for 3LZ0 at PDBWiki (http://pdbwiki.org) MMDB (Entrez's Structure Database)

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