3M0C	Protein Binding	date	Mar 02, 2010
title	The X-Ray Crystal Structure Of Pcsk9 In Complex With The Ldl
authors	G.Spraggon, E.N.Hampton
compound		source
Molecule: Proprotein Convertase Subtilisinkexin Type 9 Chain: A Fragment: Pcsk9 Synonym: Proprotein Convertase 9, Pc9, Subtilisinkexin-Lik Pc9, Neural Apoptosis-Regulated Convertase 1, Narc-1; Ec: 3.4.21.- Engineered: Yes		Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Gene: Narc1, Pcsk9, Psec0052 Expression_system: Homo Sapiens Expression_system_common: Human Expression_system_taxid: 9606 Expression_system_cell_line: Hek293
Molecule: Proprotein Convertase Subtilisinkexin Type 9 Chain: B Fragment: Pcsk9 Synonym: Proprotein Convertase 9, Pc9, Subtilisinkexin-Lik Pc9, Neural Apoptosis-Regulated Convertase 1, Narc-1; Ec: 3.4.21.- Engineered: Yes Mutation: Yes		Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Gene: Narc1, Pcsk9, Psec0052 Expression_system: Homo Sapiens Expression_system_common: Human Expression_system_taxid: 9606 Expression_system_cell_line: Hek293
Molecule: Low-Density Lipoprotein Receptor Chain: C Fragment: Ldlr Synonym: Ldl Receptor Engineered: Yes		Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Gene: Ldlr Expression_system: Homo Sapiens Expression_system_common: Human Expression_system_taxid: 9606 Expression_system_cell_line: Hek293
symmetry	Space Group: P 65	R_factor 0.341 R_Free 0.362
crystal cell	length a length b length c angle alpha angle beta angle gamma 322.906 322.906 76.733 90.00 90.00 120.00
method	X-Ray Diffraction	resolution	7.01 Å
ligand	CA	enzyme	Hydrolase E.C.3.4.21 BRENDA
Gene Ontology	Chain Function Process Component B C

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (349 Kb) [Save to disk] Biological Unit Coordinates (3m0c.pdb1.gz) 339 Kb LPC: Ligand-Protein Contacts for 3M0C CSU: Contacts of Structural Units for 3M0C Structure Factors (154 Kb) Retrieve 3M0C in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 3M0C from S2C, [Save to disk] Re-refined 3m0c structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 3M0C in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 3M0C

Ramachandran plot from PDBSum

Structure-derived information

Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 3M0C, from MSDmotif at EBI

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [3m0c_A] [3m0c] [3m0c_B] [3m0c_C] SWISS-PROT database: Domain organization of by SWISSPFAM Domains found in 3M0C: [EGF_CA] [EGF_like] [LDLa] [LY ] by SMART

Other resources with information on 3M0C

Community annotation for 3M0C at PDBWiki (http://pdbwiki.org) MMDB (Entrez's Structure Database)

Movements, Movies and Images

Images from IMB Jena Image Library of Biological Macromolecules.

You may enter another PDB ID code

Go [Back], to the [PDB Lite page], to the [OCA Search page] or to the [PDB Home page]

---

OCA© by Jaime Prilusky, 1996-2014,2022 Bioinformatics Unit Weizmann Institute of Science

---