3M1J Lyase date Mar 05, 2010
title The Crystal Structure Of A Nami A-Carbonic Anhydrase II Addu Discloses The Mode Of Action Of This Novel Anticancer Metal
authors C.Temperini, L.Messori
compound source
Molecule: Carbonic Anhydrase 2
Chain: A
Synonym: Carbonic Anhydrase II, Ca-II, Carbonate Dehydratas Carbonic Anhydrase C, Cac;
Ec: 4.2.1.1
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Ca2
Other_details: The Protein Is Purcahsed From Sigma- Aldrich
symmetry Space Group: P 1 21 1
R_factor 0.193 R_Free 0.235
crystal
cell
length a length b length c angle alpha angle beta angle gamma
42.100 41.550 72.290 90.00 104.51 90.00
method X-Ray Diffractionresolution 1.80 Å
ligand DMS, IMD, MBO, RU, ZN enzyme Lyase E.C.4.2.1.1 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceThe x-ray structure of the adduct between NAMI-A and carbonic anhydrase provides insights into the reactivity of this metallodrug with proteins., Casini A, Temperini C, Gabbiani C, Supuran CT, Messori L, ChemMedChem. 2010 Dec 3;5(12):1989-94. PMID:20931644
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (50 Kb) [Save to disk]
  • Biological Unit Coordinates (3m1j.pdb1.gz) 46 Kb
  • LPC: Ligand-Protein Contacts for 3M1J
  • CSU: Contacts of Structural Units for 3M1J
  • Structure Factors (334 Kb)
  • Retrieve 3M1J in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3M1J from S2C, [Save to disk]
  • Re-refined 3m1j structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 3M1J in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 3M1J
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 3M1J, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3m1j] [3m1j_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domain found in 3M1J: [Carb_anhydrase ] by SMART
  • Other resources with information on 3M1J
  • Community annotation for 3M1J at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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