3M33 Structural Genomics, Unknown Function date Mar 08, 2010
title The Crystal Structure Of A Functionally Unknown Protein From Deinococcus Radiodurans R1
authors K.Tan, J.Mack, B.Feldmann, A.Joachimiak, Midwest Center For Structural Genomics (Mcsg)
compound source
Molecule: Uncharacterized Protein
Chain: A, B
Engineered: Yes
 Organism_scientific: Deinococcus Radiodurans
Organism_taxid: 1299
Strain: R1
Gene: Dr_0468
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_strain: Ppk1037
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pmcsg19b
symmetry Space Group: P 62
R_factor 0.181 R_Free 0.214
crystal
cell
length a length b length c angle alpha angle beta angle gamma
104.579 104.579 125.880 90.00 90.00 120.00
method X-Ray Diffractionresolution 2.19 Å
ligand CL, GOL, MSE, SO4 enzyme
Gene DR
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (149 Kb) [Save to disk]
  • Biological Unit Coordinates (3m33.pdb1.gz) 73 Kb
  • Biological Unit Coordinates (3m33.pdb2.gz) 73 Kb
  • Biological Unit Coordinates (3m33.pdb3.gz) 144 Kb
  • Biological Unit Coordinates (3m33.pdb4.gz) 143 Kb
  • LPC: Ligand-Protein Contacts for 3M33
  • CSU: Contacts of Structural Units for 3M33
  • Structure Factors (1205 Kb)
  • Retrieve 3M33 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3M33 from S2C, [Save to disk]
  • Re-refined 3m33 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 3M33 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 3M33
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 3M33, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3m33_A] [3m33] [3m33_B]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
    • Other resources with information on 3M33
  • Community annotation for 3M33 at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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