3M6E Transport Protein date Mar 15, 2010
title F80a Mutant Of The Urea Transporter From Desulfovibrio Vulga
authors E.J.Levin, M.Zhou, New York Consortium On Membrane Protein Str (Nycomps)
compound source
Molecule: Putative Urea Transporter
Chain: A
Engineered: Yes
Mutation: Yes
 Organism_scientific: Desulfovibrio Vulgaris
Organism_taxid: 882
Strain: Hildenborough
Atcc: 29579 Ncimb 8303
Gene: Dvu_1160
Expression_system: Escherichia Coli
Expression_system_taxid: 469008
Expression_system_strain: Bl21(De3)
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pet Sumo
symmetry Space Group: P 63
R_factor 0.194 R_Free 0.224
crystal
cell
length a length b length c angle alpha angle beta angle gamma
110.558 110.558 84.523 90.00 90.00 120.00
method X-Ray Diffractionresolution 2.65 Å
ligand AU enzyme
Gene DVU
Gene
Ontology
ChainFunctionProcessComponent
A


Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (109 Kb) [Save to disk]
  • Biological Unit Coordinates (3m6e.pdb1.gz) 308 Kb
  • LPC: Ligand-Protein Contacts for 3M6E
  • CSU: Contacts of Structural Units for 3M6E
  • Structure Factors (244 Kb)
  • Retrieve 3M6E in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3M6E from S2C, [Save to disk]
  • Re-refined 3m6e structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 3M6E in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 3M6E
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 3M6E, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3m6e_A] [3m6e]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
    • Other resources with information on 3M6E
  • Community annotation for 3M6E at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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