3M85	Hydrolase Rna	date	Mar 17, 2010
title	Archaeoglobus Fulgidus Exosome Y70a With Rna Bound To The Ac
authors	S.Hartung, K.P.Hopfner
compound		source
Molecule: Putative Uncharacterized Protein Af_0206 Chain: A, B, C Synonym: Exosome Rna Binding Protein Csl4 Engineered: Yes		Organism_scientific: Archaeoglobus Fulgidus Organism_taxid: 2234 Gene: Af_0206 Expression_system: Escherichia Coli Expression_system_taxid: 562 Expression_system_strain: Rosetta De3 Expression_system_vector_type: Plasmid Expression_system_plasmid: Pet-28
Molecule: Probable Exosome Complex Exonuclease 1 Chain: D, E, F Synonym: Exosome Rna Binding Protein Rrp41 Ec: 3.1.13.- Engineered: Yes Mutation: Yes		Organism_scientific: Archaeoglobus Fulgidus Organism_taxid: 2234 Gene: Af_0493 Expression_system: Escherichia Coli Expression_system_taxid: 562 Expression_system_strain: Rosetta De3 Expression_system_vector_type: Plasmid Expression_system_plasmid: Pet-21
Molecule: Probable Exosome Complex Exonuclease 2 Chain: G, H, I Synonym: Exosome Rna Binding Protein Rrp42 Ec: 3.1.13.- Engineered: Yes Mutation: Yes		Organism_scientific: Archaeoglobus Fulgidus Organism_taxid: 2234 Gene: Af_0494 Expression_system: Escherichia Coli Expression_system_taxid: 562 Expression_system_strain: Rosetta De3 Expression_system_vector_type: Plasmid Expression_system_plasmid: Pet-21
Molecule: 5'-R(Cpupcpcpcpc)-3' Chain: X, Y, Z Engineered: Yes		Synthetic: Yes
symmetry	Space Group: P 43 2 2	R_factor 0.191 R_Free 0.278
crystal cell	length a length b length c angle alpha angle beta angle gamma 138.020 138.020 262.250 90.00 90.00 90.00
method	X-Ray Diffraction	resolution	3.00 Å
ligand	ZN	enzyme	Hydrolase E.C.3.1.13 BRENDA
Gene	AF ; AF ; AF
Gene Ontology	Chain Function Process Component A, B, C F, E, D 3'-5'-exoribonuclease activi... nuclease activity exonuclease activity exoribonuclease activity, pr... H, I, G
Primary reference	Quantitative analysis of processive RNA degradation by the archaeal RNA exosome., Hartung S, Niederberger T, Hartung M, Tresch A, Hopfner KP, Nucleic Acids Res. 2010 Apr 14. PMID:20392821

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (330 Kb) [Save to disk] Biological Unit Coordinates (3m85.pdb1.gz) 322 Kb LPC: Ligand-Protein Contacts for 3M85 CSU: Contacts of Structural Units for 3M85 Structure Factors (416 Kb) Retrieve 3M85 in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 3M85 from S2C, [Save to disk] Re-refined 3m85 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 3M85 in 3D

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Visual 3D analysis of 3M85

Ramachandran plot from PDBSum

Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 3M85, from MSDmotif at EBI

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [3m85_F] [3m85_C] [3m85_A] [3m85_H] [3m85_Y] [3m85_Z] [3m85_E] [3m85_I] [3m85_G] [3m85_X] [3m85_D] [3m85] [3m85_B] SWISS-PROT database: Domain organization of by SWISSPFAM Domain found in 3M85: [S1 ] by SMART

Other resources with information on 3M85

Community annotation for 3M85 at PDBWiki (http://pdbwiki.org) MMDB (Entrez's Structure Database)

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