3M8Q	Transferase	date	Mar 18, 2010
title	Hiv-1 Rt With Aminopyrimidine Nnrti
authors	S.F.Harris, A.Villasenor
compound		source
Molecule: Reverse Transcriptaseribonuclease H Chain: A Synonym: P66 Rt Ec: 2.7.7.49, 2.7.7.7, 3.1.26.4 Engineered: Yes		Organism_scientific: Human Immunodeficiency Virus Type 1 Organism_common: Hiv-1 Organism_taxid: 11706 Strain: Isolate Hxb2 Group M Subtype B Gene: Gag-Pol Expression_system: Escherichia Coli Expression_system_taxid: 562
Molecule: P51 Rt Chain: B Engineered: Yes		Organism_scientific: Human Immunodeficiency Virus Type 1 Organism_common: Hiv-1 Organism_taxid: 11706 Strain: Isolate Hxb2 Group M Subtype B Gene: Gag-Pol Expression_system: Escherichia Coli Expression_system_taxid: 562
symmetry	Space Group: C 2 2 21	R_factor 0.219 R_Free 0.252
crystal cell	length a length b length c angle alpha angle beta angle gamma 118.825 153.099 154.515 90.00 90.00 90.00
method	X-Ray Diffraction	resolution	2.70 Å
ligand	DJZ	enzyme	Transferase E.C.2.7.7.49 BRENDA
Gene Ontology	Chain Function Process Component A B
Primary reference	Discovery of piperidin-4-yl-aminopyrimidines as HIV-1 reverse transcriptase inhibitors. N-benzyl derivatives with broad potency against resistant mutant viruses., Kertesz DJ, Brotherton-Pleiss C, Yang M, Wang Z, Lin X, Qiu Z, Hirschfeld DR, Gleason S, Mirzadegan T, Dunten PW, Harris SF, Villasenor AG, Hang JQ, Heilek GM, Klumpp K, Bioorg Med Chem Lett. 2010 Jul 15;20(14):4215-8. Epub 2010 May 16. PMID:20538456

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (163 Kb) [Save to disk] Biological Unit Coordinates (3m8q.pdb1.gz) 158 Kb LPC: Ligand-Protein Contacts for 3M8Q CSU: Contacts of Structural Units for 3M8Q Structure Factors (299 Kb) Retrieve 3M8Q in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 3M8Q from S2C, [Save to disk] Re-refined 3m8q structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 3M8Q in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 3M8Q

Ramachandran plot from PDBSum

Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 3M8Q, from MSDmotif at EBI

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [3m8q_A] [3m8q_B] [3m8q] SWISS-PROT database: Domain organization of by SWISSPFAM

Other resources with information on 3M8Q

Community annotation for 3M8Q at PDBWiki (http://pdbwiki.org) MMDB (Entrez's Structure Database)

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